Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 160 bits (404), Expect = 1e-43
Identities = 116/398 (29%), Positives = 171/398 (42%), Gaps = 83/398 (20%)
Query: 4 TDIKKCRTYEECEDCKNKEISKCMEVCPTNAIKM----IDGKAFS--------CITCGTC 51
T+ K ++ C+ C N C+ CP +A+ + ++GK C CG C
Sbjct: 21 TEALKLNPFKVCQLCGN-----CVNACPNDALNLREIELNGKTIKQIEYFPTKCDLCGEC 75
Query: 52 AKECPTGA-IKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDI-------REDSTGKSYPT 103
K CP I+ ++ G+ C GC C CP D + + + + T P
Sbjct: 76 VKVCPNNLKIENDKLKGF------CVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPI 129
Query: 104 GM---CVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIF-KMMGKTYEFPEPKH 159
+ CV CG+C +ECP A L K ++++ S I+ + +T +
Sbjct: 130 AVTEDCVGCGVCISECPVGA--------LSIEGEKAVVDKNSCIYCSICAQTCPWNAIFV 181
Query: 160 VKIVKPAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAEMV----DGCTRCNICNEVC 215
P K S+DS C+ CG C CP+D I+ EMV GC C +C C
Sbjct: 182 AGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCMAAC 241
Query: 216 PVDAI----EYGQV-----------TENCILCGNCISKCPKDVLEI---SEFKVVKTKED 257
PVDAI EYG E C CG C KCP + + + ++ K+
Sbjct: 242 PVDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKT 301
Query: 258 VKAKPEKHCINCGLCVDKCPSNALRFENGKILYD----------PKTCTLCNTCVKECPQ 307
KA K CI CG CV CP++ALR GKI++D P C C C++ CP
Sbjct: 302 EKANEFKMCIRCGACVQSCPNDALRI--GKIIHDGKEYERIEFSPNLCDSCGKCIETCPY 359
Query: 308 GVRINKG---EFVDGGCVLCELCIKEC---PEDAISIK 339
+ G + ++G CV+C CI+ C + A+S+K
Sbjct: 360 DMLNLTGKPEKPLEGFCVMCLKCIEACDKAKKSALSLK 397
Score = 155 bits (392), Expect = 2e-42
Identities = 122/446 (27%), Positives = 184/446 (41%), Gaps = 102/446 (22%)
Query: 37 MIDGKAFSCITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIRE-D 95
MI C C C CPT A+K N + K+C CG C N CP D +++RE +
Sbjct: 1 MIKINTEDCYMCKACENSCPTEALKLNPF-------KVCQLCGNCVNACPNDALNLREIE 53
Query: 96 STGKS------YPTGMCVMCGLCTTECPYNARLYFDPSSLKNTKNKMLMERYSTIFKMMG 149
GK+ +PT C +CG C CP N + ++N K K +
Sbjct: 54 LNGKTIKQIEYFPT-KCDLCGECVKVCPNNLK-------IENDKLKGFCVGCMKCVEACP 105
Query: 150 KTYEFPEPKHVKIVKPAERKL---RHSISIDSKKCVECGKCIYLCPKDTI-IEAEMV--- 202
Y E +V+PA+R + + I++ ++ CV CG CI CP + IE E
Sbjct: 106 DDYVGME----GVVEPAKRNITLPKEPIAV-TEDCVGCGVCISECPVGALSIEGEKAVVD 160
Query: 203 -DGCTRCNICNEVCPVDAI---------------EYGQVTENCILCGNCISKCPKDVLEI 246
+ C C+IC + CP +AI ++ ++ CI CG+C KCP+D++ +
Sbjct: 161 KNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL 220
Query: 247 SEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRF--ENGK--------ILYDPKTCT 296
+E V P K C CGLC+ CP +A+ E G I++D + C
Sbjct: 221 NEMVAV---------PPKGCPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEKCA 271
Query: 297 LCNTCVKECPQGVRINKGEFVDGGCVLCELCIKECPEDAISIKERSKFTSIDK-EECIAC 355
C C +CP I + + R K ++ + CI C
Sbjct: 272 YCGPCAIKCPNN------------------AINVVNPKGLEMPSRKKTEKANEFKMCIRC 313
Query: 356 GTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDN-CVICEKCAIHCPRDVIENTSGHKK 414
G C CPNDA+ + K + ++ F+ N C C KC CP D++ T +K
Sbjct: 314 GACVQSCPNDALRI---GKIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNLTGKPEK 370
Query: 415 VVDRENSYIRTDNDYCVKCGLCTIIC 440
++ +CV C C C
Sbjct: 371 PLE----------GFCVMCLKCIEAC 386
Score = 150 bits (378), Expect = 1e-40
Identities = 95/335 (28%), Positives = 146/335 (43%), Gaps = 53/335 (15%)
Query: 179 KKCVECGKCIYLCPKDTIIEAEM-VDGCT---------RCNICNE---VCPVDA-IEYGQ 224
K C CG C+ CP D + E+ ++G T +C++C E VCP + IE +
Sbjct: 30 KVCQLCGNCVNACPNDALNLREIELNGKTIKQIEYFPTKCDLCGECVKVCPNNLKIENDK 89
Query: 225 VTENCILCGNCISKCPKD------VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPS 278
+ C+ C C+ CP D V+E ++ + KE + + C+ CG+C+ +CP
Sbjct: 90 LKGFCVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTED--CVGCGVCISECPV 147
Query: 279 NALRFENGKILYDPKTCTLCNTCVKECPQGVRINKGE------------FVDGG-CVLCE 325
AL E K + D +C C+ C + CP G+ VD C+ C
Sbjct: 148 GALSIEGEKAVVDKNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCG 207
Query: 326 LCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKV 385
C +CP D I + E ++ + C ACG C CP DAI +V++ + V
Sbjct: 208 DCTDKCPRDLIVLNE---MVAVPPKGCPACGLCMAACPVDAIELVVEYGSPKPITDEGIV 264
Query: 386 IFNDNCVICEKCAIHCPRDVIE--NTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPND 443
+ C C CAI CP + I N G ++ R+ + + C++CG C CPND
Sbjct: 265 WDEEKCAYCGPCAIKCPNNAINVVNPKG-LEMPSRKKTEKANEFKMCIRCGACVQSCPND 323
Query: 444 AIDKG------------EINTEKCEYCSACVNICP 466
A+ G E + C+ C C+ CP
Sbjct: 324 ALRIGKIIHDGKEYERIEFSPNLCDSCGKCIETCP 358
Score = 149 bits (377), Expect = 1e-40
Identities = 125/443 (28%), Positives = 169/443 (38%), Gaps = 107/443 (24%)
Query: 70 VNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDPSSL 129
+N + C C C+N CP + + + P +C +CG C CP +A
Sbjct: 4 INTEDCYMCKACENSCPTEALKLN--------PFKVCQLCGNCVNACPNDAL-------- 47
Query: 130 KNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIY 189
N + ++ GKT + I KC CG+C+
Sbjct: 48 -NLRE----------IELNGKTIK-------------------QIEYFPTKCDLCGECVK 77
Query: 190 LCPKDTIIEAEMVDG-CTRCNICNEVCPVDAI-----------------EYGQVTENCIL 231
+CP + IE + + G C C C E CP D + E VTE+C+
Sbjct: 78 VCPNNLKIENDKLKGFCVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVG 137
Query: 232 CGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGK---- 287
CG CIS+CP L I K V K CI C +C CP NA+ F GK
Sbjct: 138 CGVCISECPVGALSIEGEKAVVDKNS--------CIYCSICAQTCPWNAI-FVAGKKSPK 188
Query: 288 -------ILYDPKTCTLCNTCVKECPQGVRINKGEFV---DGGCVLCELCIKECPEDAIS 337
D C C C +CP+ + I E V GC C LC+ CP DAI
Sbjct: 189 RDKNIVKFSVDSDLCIGCGDCTDKCPRDL-IVLNEMVAVPPKGCPACGLCMAACPVDAIE 247
Query: 338 -IKERSKFTSI-------DKEECIACGTCSMVCPNDAITVVIDS-LNFSGNKVHSKVIFN 388
+ E I D+E+C CG C++ CPN+AI VV L K K
Sbjct: 248 LVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEF 307
Query: 389 DNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD--NDYCVKCGLCTIICPNDAID 446
C+ C C CP D + K++ Y R + + C CG C CP D ++
Sbjct: 308 KMCIRCGACVQSCPNDALRIG----KIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLN 363
Query: 447 ---KGEINTEK-CEYCSACVNIC 465
K E E C C C+ C
Sbjct: 364 LTGKPEKPLEGFCVMCLKCIEAC 386
Score = 145 bits (365), Expect = 3e-39
Identities = 95/300 (31%), Positives = 131/300 (43%), Gaps = 49/300 (16%)
Query: 203 DGCTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVLEISEFKVV-KTKEDVKAK 261
+ C C C CP +A++ + C LCGNC++ CP D L + E ++ KT + ++
Sbjct: 7 EDCYMCKACENSCPTEALKLNPF-KVCQLCGNCVNACPNDALNLREIELNGKTIKQIEYF 65
Query: 262 PEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECP--------------Q 307
P K C CG CV CP+N L+ EN K+ C C CV+ CP +
Sbjct: 66 PTK-CDLCGECVKVCPNN-LKIENDKL---KGFCVGCMKCVEACPDDYVGMEGVVEPAKR 120
Query: 308 GVRINKGEF-VDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366
+ + K V CV C +CI ECP A+SI+ +DK CI C C+ CP +A
Sbjct: 121 NITLPKEPIAVTEDCVGCGVCISECPVGALSIEGEKAV--VDKNSCIYCSICAQTCPWNA 178
Query: 367 ITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTD 426
I V + + +D C+ C C CPRD+I N +
Sbjct: 179 IFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL-----------NEMVAVP 227
Query: 427 NDYCVKCGLCTIICPNDAI-------------DKGEI-NTEKCEYCSACVNICPTRAIRI 472
C CGLC CP DAI D+G + + EKC YC C CP AI +
Sbjct: 228 PKGCPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINV 287
Score = 137 bits (345), Expect = 7e-37
Identities = 82/268 (30%), Positives = 123/268 (45%), Gaps = 46/268 (17%)
Query: 226 TENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFE- 284
TE+C +C C + CP + L+++ FKV C CG CV+ CP++AL
Sbjct: 6 TEDCYMCKACENSCPTEALKLNPFKV--------------CQLCGNCVNACPNDALNLRE 51
Query: 285 ---NGK----ILYDPKTCTLCNTCVKECPQGVRINKGEFVDGGCVLCELCIKECPEDAIS 337
NGK I Y P C LC CVK CP ++I + + + G CV C C++ CP+D +
Sbjct: 52 IELNGKTIKQIEYFPTKCDLCGECVKVCPNNLKI-ENDKLKGFCVGCMKCVEACPDDYVG 110
Query: 338 ----IKERSKFTSIDK------EECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIF 387
++ + ++ K E+C+ CG C CP + +L+ G K V+
Sbjct: 111 MEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP-------VGALSIEGEKA---VVD 160
Query: 388 NDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAIDK 447
++C+ C CA CP + I D+ D+D C+ CG CT CP D I
Sbjct: 161 KNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL 220
Query: 448 GE---INTEKCEYCSACVNICPTRAIRI 472
E + + C C C+ CP AI +
Sbjct: 221 NEMVAVPPKGCPACGLCMAACPVDAIEL 248
Score = 35.8 bits (81), Expect = 3e-06
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 449 EINTEKCEYCSACVNICPTRAIRI 472
+INTE C C AC N CPT A+++
Sbjct: 3 KINTEDCYMCKACENSCPTEALKL 26