Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 189 a.a., formate dehydrogenase, iron-sulfur subunit (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 52.4 bits (124), Expect = 1e-11
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 226 TENCILCGNCISKCPKDVLEISEFKV----VKTKEDVK---AKPEKHCINCG--LCVDKC 276
T+ CI C C++ C + E+ + V T D K A C++C C+ C
Sbjct: 10 TKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGKPGEASISVACMHCSDAPCMAVC 69
Query: 277 PSNAL-RFENGKILYDPKTCTLCNTCVKECPQGVR--INKGEFVDGGCV-LCELCIKECP 332
P+N + E+G +L+D TC C C+ CP G KG F + G + C C P
Sbjct: 70 PANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPQKGAFGNRGKMDKCTFCAGG-P 128
Query: 333 EDAISIKERSKFTS 346
E+ S ER K+ S
Sbjct: 129 EETHSEAERQKYGS 142
Score = 47.0 bits (110), Expect = 5e-10
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 177 DSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTENCILCGN-- 234
D+K+C+EC C+ C + E R N+ P +A ++ C+ C +
Sbjct: 9 DTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGKPGEA----SISVACMHCSDAP 64
Query: 235 CISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRF 283
C++ CP + KT++ + + CI CG C+ CP A +F
Sbjct: 65 CMAVCPANCF-------YKTEDGIVLHDKDTCIGCGYCLYACPFGAPQF 106
Score = 41.2 bits (95), Expect = 3e-08
Identities = 29/97 (29%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 287 KILYDPKTCTLCNTCVKECP--------------QGVRINKGE----FVDGGCVLCE--L 326
K L D K C CN CV C + V IN G+ + C+ C
Sbjct: 5 KFLCDTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGKPGEASISVACMHCSDAP 64
Query: 327 CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCP 363
C+ CP + K DK+ CI CG C CP
Sbjct: 65 CMAVCPANCF-YKTEDGIVLHDKDTCIGCGYCLYACP 100
Score = 39.7 bits (91), Expect = 8e-08
Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 33/131 (25%)
Query: 348 DKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDN----------CVICEK- 396
D + CI C C C N+ DS G + V ND C+ C
Sbjct: 9 DTKRCIECNGCVTACKNEN-----DSALEWGIQRRRVVTINDGKPGEASISVACMHCSDA 63
Query: 397 -CAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDA---IDKGEINT 452
C CP + T E+ + D D C+ CG C CP A KG
Sbjct: 64 PCMAVCPANCFYKT---------EDGIVLHDKDTCIGCGYCLYACPFGAPQFPQKGAFGN 114
Query: 453 ----EKCEYCS 459
+KC +C+
Sbjct: 115 RGKMDKCTFCA 125
Score = 38.1 bits (87), Expect = 2e-07
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 18 CKNKEISKCMEVCPTNAI-KMIDGKAF----SCITCGTCAKECPTGAIKKNEYGGYYVNR 72
C + + CM VCP N K DG +CI CG C CP GA + + G +
Sbjct: 57 CMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPQKGAFGNRG 116
Query: 73 KL--CTGC 78
K+ CT C
Sbjct: 117 KMDKCTFC 124
Score = 37.7 bits (86), Expect = 3e-07
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 5 DIKKCRTYEECEDCKNKEISKCME--VCPTNAIKMIDGK------AFSCITCGT--CAKE 54
D K+C C E +E + + + DGK + +C+ C C
Sbjct: 9 DTKRCIECNGCVTACKNENDSALEWGIQRRRVVTINDGKPGEASISVACMHCSDAPCMAV 68
Query: 55 CPTGAIKKNEYGGYYVNRKLCTGCGICKNVCP 86
CP K E G ++ C GCG C CP
Sbjct: 69 CPANCFYKTEDGIVLHDKDTCIGCGYCLYACP 100
Score = 29.3 bits (64), Expect = 1e-04
Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 17/92 (18%)
Query: 45 CITCGTCAKECPTGAIKKNEYG--------------GYYVNRKLCTGCGI--CKNVCPID 88
CI C C C E+G G C C C VCP +
Sbjct: 13 CIECNGCVTACKNENDSALEWGIQRRRVVTINDGKPGEASISVACMHCSDAPCMAVCPAN 72
Query: 89 IIDIREDSTGKSYPTGMCVMCGLCTTECPYNA 120
ED + C+ CG C CP+ A
Sbjct: 73 CFYKTEDGI-VLHDKDTCIGCGYCLYACPFGA 103
Score = 28.5 bits (62), Expect = 2e-04
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 177 DSKKCVECGKCIYLCP--------KDTIIEAEMVDGCTRC 208
D C+ CG C+Y CP K +D CT C
Sbjct: 85 DKDTCIGCGYCLYACPFGAPQFPQKGAFGNRGKMDKCTFC 124
Score = 27.3 bits (59), Expect = 4e-04
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 164 KPAERKLRHSISIDSKKCVECGKCIYLCPKDTIIEAEM------VDGCTRCNICNEVCPV 217
KP E SIS+ C + C+ +CP + + E D C C C CP
Sbjct: 47 KPGEA----SISVACMHCSDA-PCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPF 101
Query: 218 DAIEYGQ 224
A ++ Q
Sbjct: 102 GAPQFPQ 108