Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 558 a.a., iron-sulfur cluster-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 55.1 bits (131), Expect = 6e-12
Identities = 72/324 (22%), Positives = 128/324 (39%), Gaps = 67/324 (20%)
Query: 24 SKCMEVCPTNAI----KMIDGKAFSCITCGTCAKECPTGAIKKN----EYGGYYVNRKL- 74
++C+ CP +AI K I+ + C G+CA CPTGAI + + Y+N+ +
Sbjct: 201 NRCLNFCPADAISSVAKKIEVDPYLCHGAGSCASTCPTGAISYDLPTPQALHSYLNKMIS 260
Query: 75 -----------------CTGCGICKNVCPIDIIDIR-EDSTGKSYPTGMCVMCGLCTTEC 116
G G + D++ + E+ T S + +
Sbjct: 261 RYREQAQTAPVILFHDNAVGAGFINDDLAGDVLPVALEEITVASIDHWLAALA------- 313
Query: 117 PYNAR--LYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHS- 173
+ AR L + + T +ML + ++ E +P+ + ++ P+ S
Sbjct: 314 -WGARQVLVLNTEATAPTLTQMLKGELALANSILD---EMGQPQRLSLIDPSMLANLASV 369
Query: 174 --ISIDSKKCVECGKCIYLCPKDTIIEAEMVDGC-TRCNICNEVCPVDAIEYGQVT---E 227
IS+D V G ++T+ EA +D ++ N ++ + YG+V+ E
Sbjct: 370 LDISLDWPVIVP-GAFASSTKRNTLFEA--IDHLNSQAGEINTCLSINNVPYGKVSVNVE 426
Query: 228 NCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKP-----EKHCINCGLCVDKCPSNALR 282
C LC +C++ CP L+ D KP E++C+ CGLC CP +
Sbjct: 427 KCTLCMSCVAICPTMALQ-----------DGGDKPALHFIEQNCVQCGLCESACPEKVIS 475
Query: 283 FENGKILYDPKTCTLCNTCVKECP 306
+I +D +T +E P
Sbjct: 476 L-TPQINFDKAARQQQHTLKEEAP 498
Score = 52.0 bits (123), Expect = 5e-11
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 286 GKILYDPKTCTLCNTCVKECPQGVRINKGE-----FVDGGCVLCELCIKECPEDAISIKE 340
GK+ + + CTLC +CV CP + G+ F++ CV C LC CPE IS+
Sbjct: 419 GKVSVNVEKCTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVISLTP 478
Query: 341 RSKFTSIDKE-----------ECIACGT 357
+ F ++ ECI CG+
Sbjct: 479 QINFDKAARQQQHTLKEEAPFECIRCGS 506
Score = 45.8 bits (107), Expect = 4e-09
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 202 VDGCTRCNICNEVCPVDAIEYGQ-------VTENCILCGNCISKCPKDVLEIS-----EF 249
V+ CT C C +CP A++ G + +NC+ CG C S CP+ V+ ++ +
Sbjct: 425 VEKCTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVISLTPQINFDK 484
Query: 250 KVVKTKEDVKAKPEKHCINCG 270
+ + +K + CI CG
Sbjct: 485 AARQQQHTLKEEAPFECIRCG 505
Score = 39.7 bits (91), Expect = 3e-07
Identities = 70/354 (19%), Positives = 120/354 (33%), Gaps = 68/354 (19%)
Query: 137 LMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIYLCPKDTI 196
L E + +++GK F +P++VKI R+ I+ C +C+ CP D I
Sbjct: 163 LAEALEQLPELVGK---FDKPRYVKINADLCAHDRNGIN-------GCNRCLNFCPADAI 212
Query: 197 IEAEM---VDG--CTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVLEISEFKV 251
VD C C CP AI Y T P+ + +
Sbjct: 213 SSVAKKIEVDPYLCHGAGSCASTCPTGAISYDLPT-------------PQALHSYLNKMI 259
Query: 252 VKTKEDVKAKP----EKHCINCGLCVDKCPSNALRFENGKIL------------YDPKTC 295
+ +E + P + + G D + L +I + +
Sbjct: 260 SRYREQAQTAPVILFHDNAVGAGFINDDLAGDVLPVALEEITVASIDHWLAALAWGARQV 319
Query: 296 TLCNTCVKECPQGVRINKGEFVDGGCVLCELCIKECPE--DAISIKERSKFTSIDKE-EC 352
+ NT P ++ KGE +L E+ + D + + I +
Sbjct: 320 LVLNT-EATAPTLTQMLKGELALANSILDEMGQPQRLSLIDPSMLANLASVLDISLDWPV 378
Query: 353 IACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFN-----------DNCVICEKCAIHC 401
I G + + + ID LN ++++ + N + C +C C C
Sbjct: 379 IVPGAFASSTKRNTLFEAIDHLNSQAGEINTCLSINNVPYGKVSVNVEKCTLCMSCVAIC 438
Query: 402 PRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID-KGEINTEK 454
P +++ D+ + N CV+CGLC CP I +IN +K
Sbjct: 439 PTMALQDGG------DKPALHFIEQN--CVQCGLCESACPEKVISLTPQINFDK 484
Score = 36.6 bits (83), Expect = 2e-06
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 45 CITCGTCAKECPTGAIKKN-EYGGYYVNRKLCTGCGICKNVCPIDIIDI----------- 92
C C +C CPT A++ + + + C CG+C++ CP +I +
Sbjct: 428 CTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVISLTPQINFDKAAR 487
Query: 93 REDSTGKSYPTGMCVMCG 110
++ T K C+ CG
Sbjct: 488 QQQHTLKEEAPFECIRCG 505
Score = 35.0 bits (79), Expect = 7e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 447 KGEINTEKCEYCSACVNICPTRAIR 471
K +N EKC C +CV ICPT A++
Sbjct: 420 KVSVNVEKCTLCMSCVAICPTMALQ 444
Score = 33.5 bits (75), Expect = 2e-05
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 70 VNRKLCT-------GCGICKNVCPIDIIDIREDSTGKSYPTG--MCVMCGLCTTECPYNA 120
+N LC GC C N CP D I S K +C G C + CP A
Sbjct: 185 INADLCAHDRNGINGCNRCLNFCPADAI----SSVAKKIEVDPYLCHGAGSCASTCPTGA 240
Query: 121 RLYF--DPSSLKNTKNKML 137
Y P +L + NKM+
Sbjct: 241 ISYDLPTPQALHSYLNKMI 259
Score = 32.0 bits (71), Expect = 6e-05
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 430 CVKCGLCTIICPNDAIDKG------EINTEKCEYCSACVNICPTRAIRI 472
C C C ICP A+ G + C C C + CP + I +
Sbjct: 428 CTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVISL 476
Score = 30.4 bits (67), Expect = 2e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 13 EECEDCKNKEISKCMEVCPTNAIKMIDGKAF------SCITCGTCAKECPTGAI 60
E+C C + C+ +CPT A++ K +C+ CG C CP I
Sbjct: 426 EKCTLCMS-----CVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVI 474