Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710
Score = 74.7 bits (182), Expect = 4e-18
Identities = 48/123 (39%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 205 CTRCNICNEVCPVDA--IEYGQV---TENCILCGNCISKCPKDVLEISEFK-----VVKT 254
C C EVCP DA IE G C CG CI+ CP++ LE+ + + T
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCST 199
Query: 255 KEDVKAKPEK---HCINCGLCVDKCPSNALRFENGKILYDPKTCTL----CN-TCVKECP 306
KE +KA E CINCG CV CP++A+ E G+I D K C CN CV CP
Sbjct: 200 KEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEACVTACP 259
Query: 307 QGV 309
+ +
Sbjct: 260 RNI 262
Score = 64.3 bits (155), Expect = 5e-15
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 266 CINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQG------VRINKG----- 314
C+ G CV+ CP +AL ENG D CT C C+ CP+ VR
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCST 199
Query: 315 --------EFVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACG-----TCSMV 361
E + GC+ C C+K CP AIS + + ID+++C++ G C
Sbjct: 200 KEKLKAVMEVCEVGCINCGKCVKACPAHAIS--QETGRIEIDQKKCLSYGPDCNEACVTA 257
Query: 362 CPND 365
CP +
Sbjct: 258 CPRN 261
Score = 57.4 bits (137), Expect = 6e-13
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 10 RTYEECEDCKNKEISKC----MEVCPTNAIKMIDGK---AFSCITCGTCAKECPTGAIKK 62
R++ C+ K +S+ + C A+ + DG ++SC+ G C + CP A+
Sbjct: 99 RSFRRCDKVSGKVLSRYAYQGVPSCAAAAL-LFDGSDSCSYSCLGLGDCVEVCPFDALHI 157
Query: 63 NEYGGYYVNRKLCTGCGICKNVCP---IDIIDIRED-----STGKSYPTGM------CVM 108
E G +V+ CTGCG+C N CP +++I +R ST + M C+
Sbjct: 158 -ENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCIN 216
Query: 109 CGLCTTECPYNA 120
CG C CP +A
Sbjct: 217 CGKCVKACPAHA 228
Score = 50.1 bits (118), Expect = 1e-10
Identities = 39/171 (22%), Positives = 58/171 (33%), Gaps = 48/171 (28%)
Query: 75 CTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDPSSLKNTKN 134
C G G C VCP D + I T C CG+C CP N
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLT--HVDLAKCTGCGVCINACPRN--------------- 182
Query: 135 KMLMERYSTIFKMMGKTYEF-PEPKHVKIVKPAERKLRHSISIDSKKCVECGKCIYLCPK 193
T E P V ++ + KL+ + + C+ CGKC+ CP
Sbjct: 183 ----------------TLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPA 226
Query: 194 DTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTENCILCGNCISKCPKDVL 244
I + R I + C + YG C++ CP++++
Sbjct: 227 HAISQE-----TGRIEIDQKKC----LSYGPDCNEA-----CVTACPRNIM 263
Score = 49.3 bits (116), Expect = 2e-10
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 30/119 (25%)
Query: 176 IDSKKCVECGKCIYLCPKDTI----IEAEMVDGCT---RCNICNEVCPVDAIEYGQVTEN 228
+D KC CG CI CP++T+ + A + C+ + EVC V
Sbjct: 164 VDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEV----------G 213
Query: 229 CILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCG-----LCVDKCPSNALR 282
CI CG C+ CP + ++ +K C++ G CV CP N +R
Sbjct: 214 CINCGKCVKACPAHAISQETGRI--------EIDQKKCLSYGPDCNEACVTACPRNIMR 264
Score = 48.5 bits (114), Expect = 3e-10
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 25/135 (18%)
Query: 352 CIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSG 411
C+ G C VCP DA L+ H + C C C CPR+ +E
Sbjct: 140 CLGLGDCVEVCPFDA-------LHIENGLTHVDLA---KCTGCGVCINACPRNTLELIPV 189
Query: 412 HKKVV------DRENSYIRTDNDYCVKCGLCTIICPNDAIDKG----EINTEKC-----E 456
+V ++ + + C+ CG C CP AI + EI+ +KC +
Sbjct: 190 RARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGPD 249
Query: 457 YCSACVNICPTRAIR 471
ACV CP +R
Sbjct: 250 CNEACVTACPRNIMR 264
Score = 47.8 bits (112), Expect = 5e-10
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 327 CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVV-----IDSLNFSGNKV 381
C++ CP DA+ I+ + T +D +C CG C CP + + ++ + + + K+
Sbjct: 146 CVEVCPFDALHIE--NGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKL 203
Query: 382 HSKV-IFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRE-NSYIRTDNDYCV 431
+ + + C+ C KC CP I +G ++ ++ SY N+ CV
Sbjct: 204 KAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEACV 255
Score = 40.8 bits (94), Expect = 6e-08
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 26/90 (28%)
Query: 26 CMEVCPTNAIKMIDGKA--------------------FSCITCGTCAKECPTGAIKKNEY 65
C+ CP N +++I +A CI CG C K CP AI + E
Sbjct: 175 CINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQ-ET 233
Query: 66 GGYYVNRKLCTGCG-----ICKNVCPIDII 90
G +++K C G C CP +I+
Sbjct: 234 GRIEIDQKKCLSYGPDCNEACVTACPRNIM 263
Score = 37.0 bits (84), Expect = 9e-07
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 430 CVKCGLCTIICPNDA--IDKG--EINTEKCEYCSACVNICPTRAIRI 472
C+ G C +CP DA I+ G ++ KC C C+N CP + +
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLEL 186
Score = 33.1 bits (74), Expect = 1e-05
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 30/101 (29%)
Query: 390 NCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAI---- 445
+C+ C CP D + EN D C CG+C CP + +
Sbjct: 139 SCLGLGDCVEVCPFDALHI----------ENGLTHVDLAKCTGCGVCINACPRNTLELIP 188
Query: 446 ------------DKGEINTEKCEY----CSACVNICPTRAI 470
+K + E CE C CV CP AI
Sbjct: 189 VRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAI 229
Score = 25.0 bits (53), Expect = 0.004
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 1 MIVTDIKKCRTYEECE-DCKNKEISKCMEVCPTNAIKMIDGK----AFSCITCG-----T 50
M T K E CE C N KC++ CP +AI G+ C++ G
Sbjct: 196 MCSTKEKLKAVMEVCEVGCIN--CGKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEA 253
Query: 51 CAKECPTGAIK 61
C CP ++
Sbjct: 254 CVTACPRNIMR 264