Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 672 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Dinoroseobacter shibae DFL-12
Score = 56.6 bits (135), Expect = 3e-12
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 286 GKILYDPKTCTLCNTCVKECPQGVRINKGE-----FVDGGCVLCELCIKECPEDAISIKE 340
G + DP+ CTLC C CP G ++ E F + CV C LC CPE AI++
Sbjct: 514 GSVTVDPEACTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAITLTP 573
Query: 341 RSKFTSID 348
+ F + D
Sbjct: 574 QLDFAAWD 581
Score = 48.1 bits (113), Expect = 9e-10
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 306 PQGVRINKGEFVDGGCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPND 365
PQG C LC+ C CP A+ + + C+ CG C+ CP
Sbjct: 508 PQGAPFGSVTVDPEACTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPET 567
Query: 366 AITVVIDSLNFSGNKVHSKVIFNDNCVICEKC 397
AIT+ L+F+ +++ + C C
Sbjct: 568 AITLT-PQLDFAAWDTPRRILHEEPPFCCTVC 598
Score = 42.4 bits (98), Expect = 5e-08
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 65 YGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNA 120
+G V+ + CT C C VCP + ++ + CV CGLC CP A
Sbjct: 513 FGSVTVDPEACTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETA 568
Score = 39.7 bits (91), Expect = 3e-07
Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 325 ELCIKECPEDAISIKERSKFTSIDKEECIACGTCSM--VCPNDAITVVIDSLNFSGNKVH 382
E + P+ A+ S DK + M P A T+ + G
Sbjct: 459 EAALDVLPKSAVHAAPSSFLPPADKRGLLVMAFAEMNRAAPKPAQTLPLPQ----GAPFG 514
Query: 383 SKVIFNDNCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPN 442
S + + C +C+ C CP + + E +R CV+CGLC CP
Sbjct: 515 SVTVDPEACTLCQACTGVCPTGALLDNP--------ETPMLRFTESACVQCGLCAATCPE 566
Query: 443 DAI 445
AI
Sbjct: 567 TAI 569
Score = 37.4 bits (85), Expect = 2e-06
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 48 CGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCP 86
C C CPTGAI N ++ +C GCG C CP
Sbjct: 287 CTRCLSLCPTGAITPNG-DSVQIDPAICAGCGQCAAACP 324
Score = 37.4 bits (85), Expect = 2e-06
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 23/93 (24%)
Query: 222 YGQVT---ENCILCGNCISKCPKD-VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCP 277
+G VT E C LC C CP +L+ E +++ E C+ CGLC CP
Sbjct: 513 FGSVTVDPEACTLCQACTGVCPTGALLDNPETPMLRFTESA-------CVQCGLCAATCP 565
Query: 278 SNALRF----------ENGKILYD--PKTCTLC 298
A+ +IL++ P CT+C
Sbjct: 566 ETAITLTPQLDFAAWDTPRRILHEEPPFCCTVC 598
Score = 37.0 bits (84), Expect = 2e-06
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 257 DVKAKPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECPQG 308
D+ A C C+ CP+ A+ + DP C C C CP G
Sbjct: 275 DLCAHSRNGITGCTRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAAACPTG 326
Score = 36.2 bits (82), Expect = 4e-06
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 71 NRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNARLYFDP 126
+R TGC C ++CP I DS +C CG C CP A Y P
Sbjct: 280 SRNGITGCTRCLSLCPTGAITPNGDSV--QIDPAICAGCGQCAAACPTGAAAYALP 333
Score = 36.2 bits (82), Expect = 4e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 24 SKCMEVCPTNAIK----MIDGKAFSCITCGTCAKECPTGA 59
++C+ +CPT AI + C CG CA CPTGA
Sbjct: 288 TRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAAACPTGA 327
Score = 35.8 bits (81), Expect = 5e-06
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 173 SISIDSKKCVECGKCIYLCPKDTII---EAEMV----DGCTRCNICNEVCPVDAI 220
S+++D + C C C +CP ++ E M+ C +C +C CP AI
Sbjct: 515 SVTVDPEACTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAI 569
Score = 35.8 bits (81), Expect = 5e-06
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 203 DGCTRCNICNEVCPVDAIEYGQVT-------ENCILCGNCISKCPKDVLEIS---EFKVV 252
+ CT C C VCP A+ T C+ CG C + CP+ + ++ +F
Sbjct: 521 EACTLCQACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAITLTPQLDFAAW 580
Query: 253 KT-KEDVKAKPEKHCINCG 270
T + + +P C CG
Sbjct: 581 DTPRRILHEEPPFCCTVCG 599
Score = 34.7 bits (78), Expect = 1e-05
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 332 PEDAISIKERSKFTSI--DKEECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFND 389
P + + + + F S+ D E C C C+ VCP A+ N + F +
Sbjct: 501 PAQTLPLPQGAPFGSVTVDPEACTLCQACTGVCPTGALL---------DNPETPMLRFTE 551
Query: 390 N-CVICEKCAIHCPRDVIENT 409
+ CV C CA CP I T
Sbjct: 552 SACVQCGLCAATCPETAITLT 572
Score = 34.3 bits (77), Expect = 1e-05
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 320 GCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDA 366
G C C+ CP AI+ S ID C CG C+ CP A
Sbjct: 283 GITGCTRCLSLCPTGAITPNGDS--VQIDPAICAGCGQCAAACPTGA 327
Score = 34.3 bits (77), Expect = 1e-05
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 22/84 (26%)
Query: 13 EECEDCKNKEISKCMEVCPTNAI------KMIDGKAFSCITCGTCAKECPTGAI---KKN 63
E C C+ C VCPT A+ M+ +C+ CG CA CP AI +
Sbjct: 521 EACTLCQ-----ACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAITLTPQL 575
Query: 64 EYGGYYVNRKL--------CTGCG 79
++ + R++ CT CG
Sbjct: 576 DFAAWDTPRRILHEEPPFCCTVCG 599
Score = 29.3 bits (64), Expect = 4e-04
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 450 INTEKCEYCSACVNICPTRAI 470
++ E C C AC +CPT A+
Sbjct: 518 VDPEACTLCQACTGVCPTGAL 538
Score = 28.5 bits (62), Expect = 8e-04
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 15/48 (31%)
Query: 203 DGCTRCNICNEVCPVDAIEYGQVTEN----------CILCGNCISKCP 240
+G T C C +CP G +T N C CG C + CP
Sbjct: 282 NGITGCTRCLSLCPT-----GAITPNGDSVQIDPAICAGCGQCAAACP 324
Score = 28.1 bits (61), Expect = 0.001
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 232 CGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRF 283
C C+S CP + + V+ P C CG C CP+ A +
Sbjct: 287 CTRCLSLCPTGA-------ITPNGDSVQIDPAI-CAGCGQCAAACPTGAAAY 330
Score = 26.6 bits (57), Expect = 0.003
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 296 TLCNTCVKECPQGVRINKGEFVD---GGCVLCELCIKECPEDA 335
T C C+ CP G G+ V C C C CP A
Sbjct: 285 TGCTRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAAACPTGA 327
Score = 26.2 bits (56), Expect = 0.004
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 173 SISIDSKKCVECGKCIYLCP 192
S+ ID C CG+C CP
Sbjct: 305 SVQIDPAICAGCGQCAAACP 324
Score = 25.8 bits (55), Expect = 0.005
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 394 CEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDA 444
C +C CP I ++ D C CG C CP A
Sbjct: 287 CTRCLSLCPTGAITPNGDS----------VQIDPAICAGCGQCAAACPTGA 327
Score = 25.8 bits (55), Expect = 0.005
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 355 CGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCP 402
C C +CP AIT DS+ I C C +CA CP
Sbjct: 287 CTRCLSLCPTGAITPNGDSVQ----------IDPAICAGCGQCAAACP 324
Score = 25.8 bits (55), Expect = 0.005
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 181 CVECGKCIYLCPKDTIIEAEMVD 203
CV+CG C CP+ I +D
Sbjct: 554 CVQCGLCAATCPETAITLTPQLD 576