Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 74.3 bits (181), Expect = 5e-18
Identities = 42/126 (33%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 204 GCTRCNICNEVCPVDAIEYGQVT-------ENCILCGNCISKCPKDVLEIS-------EF 249
GC C C C DAI T C CG C+ CPK ++EI
Sbjct: 141 GCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRV 200
Query: 250 KVVKTKEDVKAKPEK----HCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKEC 305
+ +D A K CI CG CV CP A+ EN DP C C CV+ C
Sbjct: 201 YISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVC 260
Query: 306 PQGVRI 311
PQ I
Sbjct: 261 PQNTII 266
Score = 62.4 bits (150), Expect = 2e-14
Identities = 39/156 (25%), Positives = 57/156 (36%), Gaps = 36/156 (23%)
Query: 320 GCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGN 379
GC+ C C+ C DAI + + +D+ +C ACG C CP I I
Sbjct: 141 GCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE--IRPQGKKSR 198
Query: 380 KVHSKVIFNDNCVICEK-CAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTI 438
+V+ + D + K C + C+ CG C
Sbjct: 199 RVYISCVNKDKGAVARKACTVS-----------------------------CIGCGKCVK 229
Query: 439 ICPNDAI----DKGEINTEKCEYCSACVNICPTRAI 470
CP +AI + I+ KC+ C CV +CP I
Sbjct: 230 TCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTI 265
Score = 58.9 bits (141), Expect = 2e-13
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 24/132 (18%)
Query: 40 GKAFSCITCGTCAKECPTGAIKKN-EYGGYYVNRKLCTGCGICKNVCPIDIIDIR----- 93
G ++ C+ CG C C AI N E G V+ CT CG C CP II+IR
Sbjct: 137 GCSYGCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKK 196
Query: 94 ------------EDSTGKSYPTGMCVMCGLCTTECPY------NARLYFDPSSLKNTKNK 135
+ + + T C+ CG C CP+ N Y DP+ K+ +
Sbjct: 197 SRRVYISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPNKCKSCRKC 256
Query: 136 MLMERYSTIFKM 147
+ + +TI ++
Sbjct: 257 VEVCPQNTIIEL 268
Score = 58.5 bits (140), Expect = 3e-13
Identities = 46/156 (29%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 52 AKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGL 111
AK C AI + YGG C GCG C C D I + ++ C CG
Sbjct: 122 AKSC---AIAASLYGGETGCSYGCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGA 178
Query: 112 CTTECPYNARLYFDPSSLKN--------TKNKMLMERYSTIFKMMGKTYEFPEPKHVKIV 163
C CP A + P K+ K+K + R + +G K VK
Sbjct: 179 CVKACP-KAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGC------GKCVKTC 231
Query: 164 KPAERKLRHSIS-IDSKKCVECGKCIYLCPKDTIIE 198
L ++++ ID KC C KC+ +CP++TIIE
Sbjct: 232 PFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTIIE 267
Score = 54.3 bits (129), Expect = 5e-12
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 32/134 (23%)
Query: 295 CTLCNTCVKECP-QGVRINKG----EFVDGGCVLCELCIKECPEDAISIKERSK------ 343
C C CV C + +N E + C C C+K CP+ I I+ + K
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRVY 201
Query: 344 FTSIDKEE-----------CIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCV 392
+ ++K++ CI CG C CP +AIT+ + NK C
Sbjct: 202 ISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPNK----------CK 251
Query: 393 ICEKCAIHCPRDVI 406
C KC CP++ I
Sbjct: 252 SCRKCVEVCPQNTI 265
Score = 46.2 bits (108), Expect = 1e-09
Identities = 38/131 (29%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
Query: 26 CMEVCPTNAIKMIDGKAF------SCITCGTCAKECPTGAIKKNEYG----GYYVN---- 71
C+ C +AI M C CG C K CP I+ G Y++
Sbjct: 148 CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNK 207
Query: 72 ------RKLCT----GCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNA- 120
RK CT GCG C CP + I + E++ P C C C CP N
Sbjct: 208 DKGAVARKACTVSCIGCGKCVKTCPFEAITL-ENNLAYIDP-NKCKSCRKCVEVCPQNTI 265
Query: 121 -RLYFDPSSLK 130
L F P K
Sbjct: 266 IELNFPPRKPK 276
Score = 39.7 bits (91), Expect = 1e-07
Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 31/116 (26%)
Query: 176 IDSKKCVECGKCIYLCPKDTIIEAE-------------------------MVDGCTRCNI 210
+D KC CG C+ CPK IIE C C
Sbjct: 168 VDEAKCTACGACVKACPK-AIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGK 226
Query: 211 CNEVCPVDAI----EYGQVTEN-CILCGNCISKCPKDVLEISEFKVVKTKEDVKAK 261
C + CP +AI + N C C C+ CP++ + F K K + K
Sbjct: 227 CVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTIIELNFPPRKPKAEEAPK 282
Score = 39.3 bits (90), Expect = 2e-07
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 430 CVKCGLCTIICPNDAIDKG------EINTEKCEYCSACVNICPTRAIRI 472
C+ CG C C DAI E++ KC C ACV CP I I
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEI 190
Score = 37.0 bits (84), Expect = 9e-07
Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 24/121 (19%)
Query: 352 CIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIENTSG 411
C+ CG C C DAI + + + C C C CP+ +IE
Sbjct: 142 CLGCGDCVAACQFDAIHM--------NPETGLPEVDEAKCTACGACVKACPKAIIEIRPQ 193
Query: 412 HKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAIDKGEINTEKCEYCSACVNICPTRAIR 471
KK S + D V CT+ C C CV CP AI
Sbjct: 194 GKKSRRVYISCVNKDKG-AVARKACTVSCIG---------------CGKCVKTCPFEAIT 237
Query: 472 I 472
+
Sbjct: 238 L 238
Score = 30.4 bits (67), Expect = 8e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 25 KCMEVCPTNAIKMIDGKAF----SCITCGTCAKECPTGAI 60
KC++ CP AI + + A+ C +C C + CP I
Sbjct: 226 KCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTI 265
Score = 25.8 bits (55), Expect = 0.002
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 5/22 (22%)
Query: 14 ECEDCKNKEISKCMEVCPTNAI 35
+C+ C+ KC+EVCP N I
Sbjct: 249 KCKSCR-----KCVEVCPQNTI 265