Pairwise Alignments

Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 193 a.a., electron transport complex protein RnfB (RefSeq) from Shewanella sp. ANA-3

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 115 ECPY-NARLYFDPSSLKNTKNKMLMERYSTIFKMMGKTYEFPEPKHVKIVKPAERKLRHS 173
           +C Y   R Y +  +  +  NK      +T+ K+       PEP + +    A+ +++  
Sbjct: 51  QCGYPGCRPYAEAIANGDKVNKCPPGGTATMEKLANLMGVEPEPLNAE----AQSQVKKV 106

Query: 174 ISIDSKKCVECGKCIYLCPKDTIIEAE------MVDGCTRCNICNEVCPVDAIEYGQVTE 227
             I   +C+ C KCI  CP D II A       +   CT C++C E CPVD I+   V +
Sbjct: 107 AYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDMIPVGQ 166

Query: 228 N 228
           N
Sbjct: 167 N 167



 Score = 41.2 bits (95), Expect = 3e-08
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 45  CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIDI 92
           CI C  C + CP  AI       + V    CTGC +C   CP+D ID+
Sbjct: 114 CIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161



 Score = 40.4 bits (93), Expect = 5e-08
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 298 CNTCVKECPQGVRINKGEFVDGGCVLCE-----LCIKECPEDAISIKERSKFTSIDKEEC 352
           C    +    G ++NK     GG    E     + ++  P +A +  +  K   I ++EC
Sbjct: 57  CRPYAEAIANGDKVNKCP--PGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIREDEC 114

Query: 353 IACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFNDNCVICEKCAIHCPRDVIE 407
           I C  C   CP DAI         +G  +H+  +   +C  C+ C   CP D I+
Sbjct: 115 IGCTKCIQACPVDAII-------GAGKLMHT--VLTADCTGCDLCVEPCPVDCID 160



 Score = 39.3 bits (90), Expect = 1e-07
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 263 EKHCINCGLCVDKCPSNALRFENGKILYDPKT--CTLCNTCVKECP 306
           E  CI C  C+  CP +A+    GK+++   T  CT C+ CV+ CP
Sbjct: 111 EDECIGCTKCIQACPVDAI-IGAGKLMHTVLTADCTGCDLCVEPCP 155



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 351 ECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIF--NDNCVICEKCAIHCPRDVIEN 408
           +C   GT +M    + + V  + LN        KV +   D C+ C KC   CP D I  
Sbjct: 72  KCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAI-- 129

Query: 409 TSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAID 446
             G  K++   ++ +  D   C  C LC   CP D ID
Sbjct: 130 -IGAGKLM---HTVLTAD---CTGCDLCVEPCPVDCID 160



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 203 DGCTRCNICNEVCPVDAI------EYGQVTENCILCGNCISKCPKDVLEI 246
           D C  C  C + CPVDAI       +  +T +C  C  C+  CP D +++
Sbjct: 112 DECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 295 CTLCNTCVKECPQGVRINKGEFVD----GGCVLCELCIKECPEDAISI 338
           C  C  C++ CP    I  G+ +       C  C+LC++ CP D I +
Sbjct: 114 CIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM 161



 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 69  YVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECP 117
           Y+    C GC  C   CP+D I I       +  T  C  C LC   CP
Sbjct: 108 YIREDECIGCTKCIQACPVDAI-IGAGKLMHTVLTADCTGCDLCVEPCP 155



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 227 ENCILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281
           + CI C  CI  CP D + I   K++ T           C  C LCV+ CP + +
Sbjct: 112 DECIGCTKCIQACPVDAI-IGAGKLMHTVLTAD------CTGCDLCVEPCPVDCI 159



 Score = 34.3 bits (77), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 421 SYIRTDNDYCVKCGLCTIICPNDAIDKG-----EINTEKCEYCSACVNICPTRAI 470
           +YIR D   C+ C  C   CP DAI         + T  C  C  CV  CP   I
Sbjct: 107 AYIREDE--CIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159