Pairwise Alignments

Query, 170 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 23  LGNDRYTSKEMTAEILKGIELPSSVFSEICIGCGGCKNACPTNAIEMIPVEPVKITETYS 82
           +G  R  +KE+   + K I L   +  EIC+ CG C+NACP +AI            +++
Sbjct: 101 MGTLRKEAKELLWNVPKIINL--LIDEEICVSCGTCENACPVDAI------------SHN 146

Query: 83  KEAIPKIDYDKCIYCLYCHDFCPV 106
              + +ID + C+ C  C   CPV
Sbjct: 147 NTGLYEIDVNICVSCKNCLKVCPV 170



 Score = 45.1 bits (105), Expect = 1e-09
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 50  EICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFAL 109
           E CI C  CK +CP++AI M      +  E + KE +P  D   CI C  C + CP   L
Sbjct: 47  EKCISCSACKESCPSDAISM------EFNEEFKKE-MPVFDAGSCINCGNCVESCPTNVL 99



 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 52  CIGCGGCKNACPTNAIEM--IPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFAL 109
           CI CG C  +CPTN +EM  +  E  ++     K     ID + C+ C  C + CPV A+
Sbjct: 84  CINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAI 143



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 31/110 (28%)

Query: 19  ERIILGNDRYTSKEMTAEILKGIELPSSVFSEICIGCGGCKNACPTN------------- 65
           +R  LG+D     ++ AEI +       +   +CIGCG C + CP +             
Sbjct: 195 DRERLGSDFKEESDVIAEIPR-------IVPSLCIGCGNCVDVCPGSIDLERLKVTSCIK 247

Query: 66  ---AIEMIPVE------PVKITETYSKEAIPKIDYDKCIYCLYCHDFCPV 106
               +E+ P        P KIT+  ++  I  +D +KCI C  C+  C V
Sbjct: 248 SGKCLEVCPTTAIRIGVPEKITKRTAECYI--VDEEKCIGCRICYRACNV 295



 Score = 36.2 bits (82), Expect = 7e-07
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 50  EICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAI 86
           E C+ CG C+NACP +AI+ +  E  +  + YSK  I
Sbjct: 313 EYCVRCGLCQNACPVDAIDYLKTETSE--DLYSKRKI 347



 Score = 24.3 bits (51), Expect = 0.003
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 92  DKCIYCLYCHDFCPVFAL---FNE 112
           +KCI C  C + CP  A+   FNE
Sbjct: 47  EKCISCSACKESCPSDAISMEFNE 70