Pairwise Alignments

Query, 170 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 45.8 bits (107), Expect = 9e-10
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 14/59 (23%)

Query: 52  CIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFALF 110
           C+ CG C   CP +AI +              E I  ID DKCIYC  C   CP  A+F
Sbjct: 132 CVACGVCVPECPVDAISI--------------EDIAVIDTDKCIYCTVCSQTCPWNAIF 176



 Score = 39.7 bits (91), Expect = 6e-08
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 39  KGIELPSSVFSE------ICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYD 92
           KG+ELPS   +E      +CI CG C   CPT A++M      K+     + A  +    
Sbjct: 289 KGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM-----GKMVHEGKEYARVEFSPA 343

Query: 93  KCIYCLYCHDFCP 105
            C  C  C D CP
Sbjct: 344 LCNECGECVDVCP 356



 Score = 39.3 bits (90), Expect = 8e-08
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 19/64 (29%)

Query: 46  SVFSEICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCP 105
           S+  + C+ C  C  ACPT AIE+ P                   +  CI C  C   CP
Sbjct: 5   SIQEDACLVCNACAKACPTEAIEIAP-------------------FKTCIQCFSCATACP 45

Query: 106 VFAL 109
             AL
Sbjct: 46  TGAL 49



 Score = 35.4 bits (80), Expect = 1e-06
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 50  EICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFAL 109
           E C  CG C   CPT AI++  V P  +     K+     ++  CI C  C   CP  AL
Sbjct: 266 EKCAYCGPCAIKCPTGAIKV--VNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGAL 323



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 41  IELPSSVFSEICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYC 100
           IE  + + ++ CI C  C   CP NAI +    P K  +T        ++ ++CI C  C
Sbjct: 149 IEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFT---VNEEECIGCEKC 205

Query: 101 HDFCP 105
            + CP
Sbjct: 206 VEACP 210



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 46  SVFSEICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCP 105
           +V  E CIGC  C  ACP + IE            Y+ EA+       C  C  C + CP
Sbjct: 193 TVNEEECIGCEKCVEACPGSMIE------------YNGEALGVKLPGACPACGLCVESCP 240

Query: 106 VFALFNEV 113
           V  +  EV
Sbjct: 241 VEVISLEV 248



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 13/54 (24%)

Query: 51  ICIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFC 104
           +C  CG C + CP   +E+              + +P   Y  C+ CL C + C
Sbjct: 344 LCNECGECVDVCPQKTLELT-----------GDDKMPLKGY--CVMCLKCIEAC 384