Pairwise Alignments

Query, 147 a.a., NADH-quinone oxidoreductase subunit B family protein from Methanococcus maripaludis S2

Subject, 173 a.a., NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  119 bits (298), Expect = 2e-32
 Identities = 54/134 (40%), Positives = 87/134 (64%), Gaps = 8/134 (5%)

Query: 8   KKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVS 67
           K+++ V     G CNGCDIE VN   +P+YDAE++ + L  +PR ADVL+++G VT+   
Sbjct: 13  KRSLWVFHANAGACNGCDIEEVNA-FTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAE 71

Query: 68  ASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDVKVPGCP 127
             L+++Y++ P PK V+A G+CA+ GG++ +       S  + G  + ++PVD  +PGCP
Sbjct: 72  PRLRRLYEQTPNPKVVIACGSCAVGGGMWFD-------SYHVLGGADKVVPVDFYIPGCP 124

Query: 128 PRPEDVITGIVKAL 141
           PRPE ++ G+  A+
Sbjct: 125 PRPEAILWGVAVAM 138