Pairwise Alignments

Query, 331 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 347 a.a., NADH dehydrogenase subunit H from Sinorhizobium meliloti 1021

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 66/299 (22%), Positives = 135/299 (45%), Gaps = 43/299 (14%)

Query: 36  RKIQARIQQRKGPSISSP-----GFWAIFKYLYKEAKEPVSDLPKLFKFMPLLSFIIV-- 88
           RKI A +Q R+GP++  P      F  + K+++KE   P      +F   PL+S  +   
Sbjct: 38  RKIWAAVQLRRGPNVVGPFGLFQSFADLLKFVFKEPVIPAGANKTIFLLAPLVSVTLALA 97

Query: 89  -WMVLALTTVVHFHILSNEIGIIGLLKIEEMSY--IIMGSLASTVMGIRMPFIDECKGSG 145
            W V+ L    ++ I +  +GI+ +  I  +    IIMG  AS     + PF+   + + 
Sbjct: 98  AWAVIPLNA--NWVIANINVGILFVFAISSLEVYGIIMGGWASNS---KYPFLGALRSAA 152

Query: 146 YLKTIKITLGQLSAVRAFKMITVGSFPFYLATLLPFIPHKSIFLNNLIG--NSFL----F 199
            + + ++++G    V    ++ VGS       L   +  ++  L  ++G   SFL     
Sbjct: 153 QMVSYEVSIG---FVIVTVLLCVGSL-----NLTDIVNAQNDGLGTMLGLPASFLDWHWL 204

Query: 200 TLGGLFGALAYIIGYIIMTKDYPFSIMHTKADVIEGPTMEYSGKYRAFYLSVKELLMITL 259
           +L  +F  + + I  +  T   PF +   +++++ G  +EY       ++  +   +  +
Sbjct: 205 SLFPMF--IIFFISALAETNRPPFDLPEAESELVAGFMVEYGSTPYMMFMLGEYAAICLM 262

Query: 260 GSLFATLYLGIAPDILNPITI-VMNFAVALVFPIIS--------AVVSAYTPVFTFRQV 309
            +L   L+LG     L P+ I ++N+   +++ ++         A+V A+ P + + Q+
Sbjct: 263 CALTTILFLG---GWLPPVDIWLLNWVPGIIWFVLKASLVFFMFAMVKAFVPRYRYDQL 318