Pairwise Alignments

Query, 416 a.a., histidine--tRNA ligase from Methanococcus maripaludis S2

Subject, 425 a.a., histidyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  147 bits (372), Expect = 5e-40
 Identities = 116/424 (27%), Positives = 190/424 (44%), Gaps = 43/424 (10%)

Query: 3   QKPKGTRDFLPEEMKKRKTIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG---DEIRT 59
           Q  +G  D LP +    + +E  LR    +Y +SEI TP  E+ +L  +  G   D +  
Sbjct: 6   QAIRGMNDILPTQSPLWQKVEAVLRSSVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEK 65

Query: 60  QLFVFRDHGDREMGLRPELTSSVARFYINEFKNTPKPVKLYYFTNCFRYENPQAGRYREF 119
           +++ F D     + LRPE T+S  R          +  +L+Y    FR+E PQ GRYR+F
Sbjct: 66  EMYTFEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWYMGPMFRHERPQKGRYRQF 125

Query: 120 WQMGSELIGSKKPIADAEVVNMAIEGLKEINMDFEIHIGHLGVLKGVFEKYNLSDDEGNE 179
            Q G E+ G      DAEV+ ++                       ++EK  +++    E
Sbjct: 126 HQFGVEIYGIGSADIDAEVLMLSAR---------------------LWEKLGITEHVTLE 164

Query: 180 IRRLIDKEDMDGLKSVL--------SRLESEKNIEISKKVFEVLDLKGGKEVIPILKE-- 229
           +  L D  +    +  L         +L+ +    +      VLD K   +V  IL +  
Sbjct: 165 LNTLGDPAERAAYREALIAFLEQHKDKLDEDSQRRMYSNPLRVLDSK-DPQVQSILADAP 223

Query: 230 KLADF--ESSVAALENLDSILEFVPHDYVINFGIARGLDYYTGMVFEVYGKKEGAK-QVC 286
            L D+  E S      L  +L+ V   Y +N  + RGLDYY   VFE      G++  V 
Sbjct: 224 ALMDYLGEESSQHFAQLRELLDAVGIQYRVNSRLVRGLDYYNRTVFEWVTNSLGSQGTVL 283

Query: 287 GGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVENE---SIFVVPVKSSEMLLKE 343
            GGRYD L+    G+ +PAVGFA G +RI+L ++   +  +    + V      +  L E
Sbjct: 284 AGGRYDGLVAQLGGKETPAVGFAMGLERIVLLLETLALTQDIPAEVDVYVAAMGDNCLVE 343

Query: 344 CLKIAKTLRDSGKSVEV--DLMGRKLNKALNYANTKNIKKVLIVGENDIRDGKVSLKNME 401
            +K+A+ LR +  ++ V     G  L K +  A+    +  L++GE ++ +G V++K + 
Sbjct: 344 AIKVAQELRSALPTLRVMSHCGGGNLKKQMKRADKSGAQVALLIGEEELAEGVVTVKYLR 403

Query: 402 TGEQ 405
              +
Sbjct: 404 NDNE 407