Pairwise Alignments

Query, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

Subject, 378 a.a., Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) from Pseudomonas fluorescens FW300-N2E2

 Score =  274 bits (700), Expect = 3e-78
 Identities = 153/375 (40%), Positives = 215/375 (57%), Gaps = 33/375 (8%)

Query: 4   ILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63
           IL L DG+I RGE  GA+ + +GE+VFNT+MTGY EILTDPSY  QI+T+TYP  GN G 
Sbjct: 6   ILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTGT 65

Query: 64  EKEWFESDGIKAEGFVVKDI--------TGKELDEFLKEYNIPGISGVDTRYITRKIRSK 115
             E  ESD + + G V++D+            L ++LK  N+  I+G+DTR +TR +R K
Sbjct: 66  TPEDAESDRVWSAGLVIRDLPLVASNWRNTMSLSDYLKANNVVAIAGIDTRRLTRILREK 125

Query: 116 GVIRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKETVIYNAE--DEKT-- 171
           G     +    N      E   +     +P +  +DL   VSTK+   + +   D KT  
Sbjct: 126 GAQNGCIMAGDNI----SEEAAIAAAQGFPGLKGMDLAKVVSTKKQYEWRSTVWDLKTDS 181

Query: 172 -----------RCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDFVLVSNG 220
                        V  D GVK +I+  LVERGC V  VP  +   ++++  PD V +SNG
Sbjct: 182 HATIEASELPYHVVAYDYGVKLNILRMLVERGCRVTVVPAQTPAADVLALKPDGVFLSNG 241

Query: 221 PGDPENMSETVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVE 279
           PGDPE     ++ +K+++   +PV GICLGHQ++ +A G KT K+  GH G N PV+D++
Sbjct: 242 PGDPEPCDYAIQAIKDVLETEIPVFGICLGHQLLALASGAKTLKMGHGHHGANHPVQDLD 301

Query: 280 SGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSVQYHPEA 339
           +G V ITSQNHGFA D+  +PA    +H +L D T++GI + + S      +S Q HPEA
Sbjct: 302 TGVVMITSQNHGFAVDEATLPANVRAIHKSLFDGTLQGIERTDKS-----AFSFQGHPEA 356

Query: 340 GPGPHDARFLFDEMV 354
            PGP+D   LFD  +
Sbjct: 357 SPGPNDVAPLFDRFI 371