Pairwise Alignments

Query, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

Subject, 390 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella loihica PV-4

 Score =  282 bits (722), Expect = 9e-81
 Identities = 152/377 (40%), Positives = 219/377 (58%), Gaps = 34/377 (9%)

Query: 4   ILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63
           +LVLEDGT+  G   GA+   +GE+VFNTSMTGY EILTDPSY  QI+T+TYP  GN G 
Sbjct: 15  LLVLEDGTVFSGTAIGADGLAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNTGT 74

Query: 64  EKEWFESDGIKAEGFVVKDI--------TGKELDEFLKEYNIPGISGVDTRYITRKIRSK 115
             E  ES+ + A G +++D+          + L ++LK  N+ GI+ +DTR +TR +R K
Sbjct: 75  NSEDTESEAVHACGLIIRDLPLLASNFRNEQSLSDYLKSNNVVGIADIDTRKLTRILREK 134

Query: 116 GVIRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKETVIYNA--------- 166
           G     +          +E + L     +P +  +DL  EV+T++   + +         
Sbjct: 135 GAQAGAILVGDM-----DEAKALAAAKAFPGLKGMDLAKEVTTQKQYQWRSGSWRLVGGL 189

Query: 167 ------EDEKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDFVLVSNG 220
                  + K + V  D GVK++I+  LV+RGC V  VP  +   E+++ NPD + +SNG
Sbjct: 190 PSDTPESELKYKVVAYDYGVKRNILRMLVDRGCDVTVVPAQTPAAEVLAMNPDGIFLSNG 249

Query: 221 PGDPENMSETVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVE 279
           PGDPE     +E ++  +   +P+ GICLGHQ++ +A G KT K+KFGH G N PV ++E
Sbjct: 250 PGDPEPCDYAIEAIQAFLKTDIPLFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNLE 309

Query: 280 SGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSVQYHPEA 339
            G V ITSQNHGFA D+  +PA  ++ H +L D +++GI   +        +S Q HPEA
Sbjct: 310 KGNVMITSQNHGFAADETSLPANVKVTHKSLFDGSLQGIHLTD-----KPAFSFQGHPEA 364

Query: 340 GPGPHDARFLFDEMVEL 356
            PGPHDA  LFD  +EL
Sbjct: 365 SPGPHDAAPLFDHFIEL 381