Pairwise Alignments

Query, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

Subject, 386 a.a., carbamoyl-phosphate synthase, small subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  288 bits (736), Expect = 2e-82
 Identities = 156/377 (41%), Positives = 220/377 (58%), Gaps = 33/377 (8%)

Query: 4   ILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63
           +LVLEDGT+  G   GA+   +GE+VFNTSMTGY EILTDPSY  QI+T+TYP  GN G 
Sbjct: 10  LLVLEDGTVFTGTAIGADGLSVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNTGT 69

Query: 64  EKEWFESDGIKAEGFVVKDI--------TGKELDEFLKEYNIPGISGVDTRYITRKIRSK 115
             E  ES+G+ A G +++D+          + L ++LK  N+ GI+ +DTR +TR +R K
Sbjct: 70  NNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILREK 129

Query: 116 GVIRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKETVIYN---------- 165
           G     +    +     +E + L     +P +  +DL  EV+T +   +           
Sbjct: 130 GAQAGCIMAGADL----DEVKALAAAKAFPGLKGMDLAKEVTTDKAYPWRKGSWRLVGGL 185

Query: 166 -----AEDEKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDFVLVSNG 220
                AE  K + V  D GVKQ+I+  LV+RGC V  VP  +   E+++ NPD V +SNG
Sbjct: 186 PADTPAEALKYKVVAYDYGVKQNILRMLVDRGCDVTVVPAKTPASEVLAMNPDGVFLSNG 245

Query: 221 PGDPENMSETVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVE 279
           PGDPE     +E ++ ++    P+ GICLGHQ++ +A G KT K+KFGH G N PV ++E
Sbjct: 246 PGDPEPCDYAIEAIQQILKTDTPIFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNIE 305

Query: 280 SGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSVQYHPEA 339
            G V ITSQNHGFA D+  +PA  ++ H +L D +++GI   +        +S Q HPEA
Sbjct: 306 KGNVMITSQNHGFAADEATLPANIKVTHKSLFDGSLQGIHLTD-----KPAFSFQGHPEA 360

Query: 340 GPGPHDARFLFDEMVEL 356
            PGP+DA  LFD  +EL
Sbjct: 361 SPGPNDAAPLFDHFIEL 377