Pairwise Alignments

Query, 633 a.a., IGHMBP2 family helicase from Methanococcus maripaludis S2

Subject, 908 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 58.9 bits (141), Expect = 9e-13
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 68/275 (24%)

Query: 375 LEDYKFDIAVIDEGSQSTEPSSLIPIVRSRKLIIAGDHKQLPP-TVLSDELELKKTLFER 433
           L+   FD+ +IDE +Q+     L  + R++  ++ GD KQL   + LS E   K+   + 
Sbjct: 517 LQQEMFDLVIIDEATQANIAECLPALQRAKAALVVGDSKQLRHFSFLSRE---KQASIQT 573

Query: 434 MIQEHPEFSKILQVQ------------------------YRMNEKIMEFSNEMFYENKLI 469
            +   P+   +L  +                        +R   ++++FSN+ FY     
Sbjct: 574 QLGIAPDRRGLLSYRDASMLDLVSGSLSGQAQVAFLDEHFRSKPELIQFSNQAFY----- 628

Query: 470 AHESVKSQNLLEIVENVSNEDKDIINEKPLQFINVDGEEKQNSFKSSYNVEEAEKVLEIV 529
                  QN L+++++     +   +   L  I VDG           N+ EAE +++ +
Sbjct: 629 -------QNALKVMQH-----RPCTSSGHLHRIQVDGMRD----AKGVNLLEAEALMDKL 672

Query: 530 SKLQKYE----IP--VSVITPYDAQVKYISK---------MLNTDKIDVKSVDGFQGREN 574
           +KL + +    +P  + V++ +  Q +Y+SK          +   ++ + +  GFQG E 
Sbjct: 673 AKLIEEQADALVPSSIGVLSCFRHQTEYLSKQIIARFSLAQIERHQLRIATPFGFQGEER 732

Query: 575 EVIVISFVRTSK----MGFLKDLKRLNVAVTRAKR 605
           +++++SF  T++      +L      NVA+TRAK+
Sbjct: 733 DIMLLSFSVTAQDSRAAAYLNRADMFNVAITRAKQ 767



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 156 SPQKSK--TTEVRFLDYRLNEYQKEAVLEALAARDLYLIHGPPGTGKTSTISEVILQEAL 213
           SPQ  +  TT+   L   L+  Q +A L   A   L  I GPPGTGK+ TI+ +  ++ L
Sbjct: 239 SPQSKRQVTTQQDCLPGLLSNAQMQA-LNIAANHTLGQISGPPGTGKSYTIATIAAEQIL 297

Query: 214 RKNKVIATADSNIAVDNILSNISKHESF--KIVRIGHPSRISK 254
           R   V+  A +++AVD I   + +       ++R G P  I +
Sbjct: 298 RGKSVLIAAHTDVAVDVIADKLQQQFQLGSSLIRAGSPQFIKQ 340