Pairwise Alignments

Query, 311 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 318 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  300 bits (767), Expect = 4e-86
 Identities = 136/313 (43%), Positives = 221/313 (70%), Gaps = 3/313 (0%)

Query: 2   DGTLIAGAFYSSFLYTVRISVVVLLTIYIVNYFVNRGLLEKISDYASPVTKKLNLNSFLV 61
           D +++  +  S+ LYT+++S VVLLT++I+N  +N G+++K+S++  P TK L +N   +
Sbjct: 5   DFSILGNSLLSAALYTIKLSSVVLLTMFIMNCLINTGIMKKVSNFLYPFTKHLKMNQLSL 64

Query: 62  SSILVSFFSPTVGYTMLADGITEKELTQTEVLAGTLANSFPAVFSHVLTYYIPVVIPILG 121
            SIL  FFSPTVGY++LA+G  +K++ + E++  +LANSFP++FSH  T++IP+ IP+LG
Sbjct: 65  YSILSCFFSPTVGYSILAEGYNDKKVNEKELIGSSLANSFPSIFSHTFTFFIPIAIPLLG 124

Query: 122 YTGIIYVILRLSIAFIKSMLGLFILLIISRKNTGNIKSSGNKINNKIS---PFEKTFKFA 178
            TG+IY+++R  +A +K+++GL  L ++S+        +  + N K S    FE T + +
Sbjct: 125 MTGVIYILIRSGVAMVKTIIGLCYLALVSKNTVEYEPKNEEQKNIKKSMKKSFESTLRVS 184

Query: 179 RRFVPVMFISMFLVLYLSKTGFFDVFSRIVMPVTNIFNLNPNTGILAITEIINVSAAMVM 238
           +R +P+MF++MF+V+Y S  G F+V   I+ PVT   NL+P+ GIL +T++INV AAMVM
Sbjct: 185 KRILPIMFVTMFIVIYFSNLGVFEVIKLIINPVTGYLNLDPSVGILILTDLINVQAAMVM 244

Query: 239 AGTFLNEASLTQNEVLIGLIFGNIVAFSTRSVKHSIPLHFSLFGSKMGTKVIILNSGVTI 298
               L +  L+  +V+IGLIF N+++ STR  KHS+PLH SLFG K+GTK++++N+ +T 
Sbjct: 245 GSGLLEKGVLSSKDVIIGLIFANVISLSTRYAKHSLPLHVSLFGPKLGTKIVMINASITF 304

Query: 299 ILDILIIGFLIMI 311
            +DILIIG  +++
Sbjct: 305 AIDILIIGAFLLL 317