Pairwise Alignments

Query, 251 a.a., YchF/TatD family DNA exonuclease from Methanococcus maripaludis S2

Subject, 276 a.a., TatD-related deoxyribonuclease (RefSeq) from Shewanella loihica PV-4

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 67/258 (25%), Positives = 129/258 (50%), Gaps = 20/258 (7%)

Query: 9   IDSHCHVEDKSLNKYREDIVKRAFEKKVQ-MVTSGTNLGSCRRAVELKEKYGIYVTLGYH 67
           IDSH H++    +  RE +V+R     ++  V  G +     +   +  +YG + +LG H
Sbjct: 20  IDSHVHLDFGEFDAERELLVERLKASGLKDAVIPGVSASQWPKLQAVASRYGFHYSLGVH 79

Query: 68  PGRVNAD-DNAIEKVYNFI--RSKEKEILAVGEIGLD-FDAENIERQENIFKKFINLSKE 123
           P    AD    IE +   +  R  + +++A+GE GLD     + E Q   F+  + L+++
Sbjct: 80  PWYCTADWRQDIENLSKLLDERGGDPKLVAIGECGLDALHKASWEAQLPCFEAQLQLAQQ 139

Query: 124 VNKPVVIHARGMEERSYDILKNDVIS---MYHCYSGSLELAKELIKNGNFISYSTLVCFS 180
            + PV++H+         +LK   ++   + H + GS++LA+  +  G ++    L+   
Sbjct: 140 HDLPVILHSVKAHNEVLALLKRYPLTRGGVIHGFYGSMQLAQRYVDAGYYLGIGHLLLEE 199

Query: 181 EHHK---NLVKNLGLENVVVETDSPYLSPIK----GEKNEPKNVI--NVIETIWELKKDE 231
           +  K    LVK L LE++V+ETD   +S +K     +K    ++I   +IE I +L+K  
Sbjct: 200 KAKKLQETLVK-LPLEHLVIETDLALVSQVKKSDLADKTGGSSLILHLLIEKIAKLQKKS 258

Query: 232 YSMDEITKIIYNNTKRLY 249
             +  +++ ++ NT +L+
Sbjct: 259 NVL--VSEQVFLNTLQLF 274