Pairwise Alignments

Query, 251 a.a., YchF/TatD family DNA exonuclease from Methanococcus maripaludis S2

Subject, 256 a.a., hydrolase, TatD family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 60/233 (25%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 9   IDSHCHVEDKSLNKYREDIVKRAFEKKVQ-MVTSGTNLGSCRRAVELKEKYGIYVTLGYH 67
           +D+H H++    +  R+D+V+R  +  +  ++  G +     + + + ++Y  Y  LG H
Sbjct: 4   LDTHAHLDFSEFDADRDDVVQRMRQVGIDNLIIPGVSPEHWPKQLAIAKQYQSYFALGIH 63

Query: 68  PGRVNADDNAIEKVYNFIRSKEKE---ILAVGEIGLD-FDAENIERQENIFKKFINLSKE 123
           P     + +        + S+ +E    +A+GE GLD    +N   Q   F+  + L+ +
Sbjct: 64  PWFCPENVDETISALTLLVSQLRECPRFVAIGECGLDKLYPDNWNLQLLFFEAQLALAHD 123

Query: 124 VNKPVVIHARGMEERSYDILKNDVI---SMYHCYSGSLELAKELIKNGNFISYSTLVCFS 180
           VN P++IHA    +     LK   +    + H +SGS ++A E  K G  +    L+   
Sbjct: 124 VNLPIIIHAVKAHQEVLSYLKRHKLPRGGVIHAFSGSSDIALEYTKLGFKLGIGGLIMNP 183

Query: 181 EHHKNL--VKNLGLENVVVETDSPYLSP--IKGEKNEPKNVINVIETIWELKK 229
              K L  V  L L++ ++ETDSP ++P  +  ++N+P N +  ++ I  L+K
Sbjct: 184 NAKKLLKTVSELPLDSFLLETDSPAMTPLNVTDKRNQPANAVLFMDKIATLQK 236