Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 477 a.a., Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  156 bits (395), Expect = 1e-42
 Identities = 97/305 (31%), Positives = 172/305 (56%), Gaps = 26/305 (8%)

Query: 2   LDKLGQNLSDALNKLKNATFVDKKLVK-EVIKDIQKALIQSDVNVK----LVFNMSKEIE 56
           L K   ++ + +  L    F+ KK++  E+++DI+  L+ +DV V+    ++ ++++++ 
Sbjct: 179 LSKTSASIGEGMASL----FLGKKVIDDELLEDIETRLLTADVGVEATSVIIQSLTQKVA 234

Query: 57  RKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLEL-DPSKKSVILLIGIQGSGKTT 115
           RK + +A        + + K +  EL  LL    + L +   +K  VIL++G+ G+GKTT
Sbjct: 235 RKQLTDA--------DALYKSLQGELTSLLKPVEKPLVIASQNKPFVILVVGVNGAGKTT 286

Query: 116 SAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDET-RTKTPVEITKE 174
           +  KLA+ +Q +G +  L A D +R AA +QL+   E+  +P+    T      V     
Sbjct: 287 TIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAV 346

Query: 175 GMEKLKKVDVIIIDTAGRHKEEEGLLAEMKEMK------DLTNPNEIILVIDGTLGQQAK 228
              K + +DV+I DTAGR   ++ L+ E+K+++      D   P+E++LV+D   GQ A 
Sbjct: 347 QAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAI 406

Query: 229 NQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKK 288
           NQAK F ++V E+  + +TKLDG+AKGG   +   +   PI++IG GEG+D+L  F+ + 
Sbjct: 407 NQAKQFNQTV-ELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEP 465

Query: 289 FISRI 293
           F+  +
Sbjct: 466 FVQAL 470