Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

 Score =  260 bits (665), Expect = 6e-74
 Identities = 152/448 (33%), Positives = 258/448 (57%), Gaps = 7/448 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + +  +K+ +++++ AL+++DV + +V +    ++  A+
Sbjct: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K L+  +  +KIV  +L  ++GE+ + L L     +VIL+ G+QG+GKTTS  KL
Sbjct: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL 179
           ++ ++++  +  L ++ADVYRPAA +QL+ L+  + V  F   T  + P++I    ++  
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFF-PSTPDQKPIDIANAAIDHA 179

Query: 180 KK--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KK   DV+I+DTAGR   +E ++AE++ +    NP E + V+D   GQ A + AKAF ++
Sbjct: 180 KKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKFIG GE  D LE F P +  SRILG+G
Sbjct: 240 LPLTG-VILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILKGK--FTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E  +  +D+   E +    K K  F L +   QL  +  MG M  +L  +PGM 
Sbjct: 299 DVLSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMS 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                   ++ +   K+ + +++SMTM+E++NP+LIK SR +RIA G+G + +++  LLK
Sbjct: 359 QLPADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQMGQIM 443
            ++  +     +++G M  M   M  +M
Sbjct: 419 QFTQMQKMMKKMQQGGMKGMMRNMQGLM 446