Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 518 a.a., signal recognition particle-docking protein FtsY from Synechococcus elongatus PCC 7942

 Score =  132 bits (333), Expect = 2e-35
 Identities = 90/305 (29%), Positives = 169/305 (55%), Gaps = 21/305 (6%)

Query: 2   LDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAID 61
           LDK  ++L   +N+LK+A      L  + ++ I+  L+Q+DV V+    +  +++ K   
Sbjct: 221 LDKTRRSL---VNQLKSAVG-QGPLSADAVETIEALLLQADVGVEATDRILTQLQAKLRQ 276

Query: 62  EA--PPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKK--SVILLIGIQGSGKTTSA 117
           EA  P + ++  + +++ + D+ +    ET+ +  L P K   +V L+ G+ G GKTT+ 
Sbjct: 277 EALPPEQAIAYLKQLLQQLLDQPL----ETSGRYILAPEKGRLNVWLVCGVNGVGKTTTI 332

Query: 118 AKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME 177
            KLA    K G R  + AAD +R AA +Q+K   ++  V +  +  +   P  +  + + 
Sbjct: 333 GKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTDPAAVVFDAIA 392

Query: 178 --KLKKVDVIIIDTAGRHKEEEGLLAEMKEMK---DLTNPNEII---LVIDGTLGQQAKN 229
             + +  +++++DTAGR + ++ L+ E+ +++   D   P+ I+   LV+D T GQ    
Sbjct: 393 AAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVLDATQGQNGLR 452

Query: 230 QAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKF 289
           QA+ F E+ +++  + +TKLD +AKGG AL+   ++  PI+F+G GE + +L  F   +F
Sbjct: 453 QAQVFAEA-AQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQDLRPFSSYEF 511

Query: 290 ISRIL 294
           I  +L
Sbjct: 512 IQALL 516