Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 496 a.a., signal recognition particle subunit FFH/SRP54 (srp54) from Synechococcus elongatus PCC 7942

 Score =  309 bits (791), Expect = 2e-88
 Identities = 163/442 (36%), Positives = 274/442 (61%), Gaps = 7/442 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L + L  A  KL+    + +  V+E +K++++AL+++DVN+ +V     +++ KA+
Sbjct: 12  MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 71

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                 G+   +  +K+VYDELV+++GET   L       +VIL+ G+QG+GKTT+ AKL
Sbjct: 72  GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 131

Query: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
           A +++K+G    L+A DVYRPAA  QL  L ++I+VP+F +      PVEI ++G+EK +
Sbjct: 132 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVF-ELGSDANPVEIARQGVEKAR 190

Query: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
           +  +D +I+DTAGR + +  ++ E+ ++K+   P+E++LV+D  +GQ+A +  ++F E +
Sbjct: 191 QEGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERI 250

Query: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGD 298
              G+IL TKLDG ++GG ALS       PIKF+G GE V+ L+ F P++  SRILG+GD
Sbjct: 251 GITGAIL-TKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGD 309

Query: 299 LDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGN 357
           + +L+EK ++ +D    E+  + IL  KF   +   Q+  +  MG +   + +IPG+GG 
Sbjct: 310 VLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGK 369

Query: 358 MPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKT--SRLQRIAKGAGVKQEEIKDLLK 415
           +  E  +  E +LKR + M++SMT +E+ +P+L+    SR  RIAKG G  + EI+ +++
Sbjct: 370 INDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQ 429

Query: 416 YYSTTKNAFGNLKRGKMPKMGG 437
            +   +     + +G  P MGG
Sbjct: 430 QFQQMRTMMQQMSQGGFPGMGG 451