Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 513 a.a., signal recognition particle protein from Sinorhizobium meliloti 1021

 Score =  270 bits (689), Expect = 1e-76
 Identities = 166/453 (36%), Positives = 262/453 (57%), Gaps = 16/453 (3%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   L   LN L     + +  V   ++++++AL+++DV + +V + ++++  KA+
Sbjct: 1   MFESLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTEKVREKAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K +   + +VKIV+DEL+ +LG     ++L+ +   VI+++G+QGSGKTT+  K+
Sbjct: 61  GAEIVKSIKPGQMVVKIVHDELIAMLGSEGVTIDLNAAAPVVIMMVGLQGSGKTTTTGKI 120

Query: 121 ARYIQKKGLRPGLIAA-DVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           A+ +  +  +  L+A+ D  RPAA +QL+QL  +  V         ++P +I    ++  
Sbjct: 121 AKRLTARDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTL-PVIAGQSPTDIAARAVQAA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KL   D++I+DTAGR   +E L+ EM E+K  +NP+EI+LV D   GQ A N A+ F E 
Sbjct: 180 KLGGHDIVILDTAGRTHIDEPLMIEMAEIKRKSNPHEILLVADALTGQDAVNLARNFDER 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           V   G +L T++DG  +GG ALS  A    PIK IG GE +D LE+F P++   RILG+G
Sbjct: 240 VGITGLVL-TRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMDELEEFHPRRVADRILGMG 298

Query: 298 DLDSLLEK-TEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
           D+ SL+EK  E+I  E        + KGKF L +L  QL+ + KMG M  I+ ++PGM G
Sbjct: 299 DIVSLVEKAAENIDAEKAAAMAAKMAKGKFDLNDLADQLQQMQKMGGMGGIMGLMPGMAG 358

Query: 357 NMPK-EAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
              K  AA L ++  KR   ++ SMT  E+ NP+++K SR +RIA G+G    +I  LLK
Sbjct: 359 MKDKMSAAGLDDSLFKRQLAIISSMTRAERANPDILKHSRKKRIASGSGTDASDINKLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQ-MGQIMRQLM 447
            +    +         M  MGG+  G +M+Q+M
Sbjct: 419 MHRQMAD--------MMKMMGGKGKGGMMKQMM 443