Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 457 a.a., signal recognition particle protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  276 bits (705), Expect = 1e-78
 Identities = 163/452 (36%), Positives = 268/452 (59%), Gaps = 13/452 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + +  +K+ +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MFENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +   K L+  +  VKIV  EL K +GE  + L L     +VI++ G+QG+GKTTS AKL
Sbjct: 61  GQDVAKSLTPGQVFVKIVQSELEKAMGEANEALNLAAQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 121 ARYI---QKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME 177
           ++++   QKK +   +++ADVYRPAA +QL+ L++++ V  F  +   K P++I    + 
Sbjct: 121 SKFLRTRQKKSVL--VVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQK-PIDIANAAIS 177

Query: 178 --KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFK 235
             KLK +DV+I+DTAGR   +E ++ E+K +     P E + V+D   GQ A N AKAF 
Sbjct: 178 HAKLKFIDVVILDTAGRLHVDEAMMDEIKALHAAVKPIETLFVVDAMTGQDAANTAKAFN 237

Query: 236 ESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILG 295
           E++   G +++TK+DG A+GG ALS       PIKF+G GE  D LE F P +  SRILG
Sbjct: 238 EALPLTG-VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILG 296

Query: 296 LGDLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPG 353
           +GD+ SL+E+ E  +D+     + S +K  G F L +   QL+ +  MG M  +L  +PG
Sbjct: 297 MGDVLSLIEQVERGVDKEKAMKLASKVKSGGNFDLEDFREQLQQMKNMGGMMGLLEKLPG 356

Query: 354 MGGNMPKEAAQLTEAKLKR-YKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKD 412
           +G   P+  AQ+ + K+ R  + +++SMT  E++NP++IK SR +RIA G+G + +++  
Sbjct: 357 VGQLPPEAMAQIQDGKMTRQMEAIINSMTPGERQNPDIIKGSRKRRIAAGSGTQIQDVNR 416

Query: 413 LLKYYSTTKNAFGNL-KRGKMPKMGGQMGQIM 443
           LLK ++  +     +  +G M KM   MG +M
Sbjct: 417 LLKQFTQMQKMMKKMSSKGGMQKMMRAMGGMM 448