Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 504 a.a., Signal recognition particle protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  266 bits (681), Expect = 9e-76
 Identities = 168/456 (36%), Positives = 270/456 (59%), Gaps = 24/456 (5%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   L D L+KL+    + +  V   +++++ AL+++DV + +V     +++ +AI
Sbjct: 1   MFDGLSGRLGDVLDKLRRRGSLSEADVDAAMREVRVALLEADVALAVVKQFVAQVKEQAI 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLL-GETTQKLELDPSKKSV---------ILLIGIQG 110
            +   + ++  + +VK+V+D LV +L GE   + E DP    +         IL++G+QG
Sbjct: 61  GQEVIRSVTPGQMVVKLVHDALVDMLSGEGGVEAEPDPMSLGIDIAHTPPVPILMVGLQG 120

Query: 111 SGKTTSAAKLARYIQKKGLRPGLIAA-DVYRPAAYQQLKQLSEKINVPLFGDETRTKTPV 169
           SGKTT++AK+A  I K+  +  L+A+ DVYRPAA +QL  L E+  V    +    + PV
Sbjct: 121 SGKTTTSAKIALRITKRERKKVLMASLDVYRPAAQRQLAILGEQTGVDTL-EVVMGQKPV 179

Query: 170 EITKEGME--KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQA 227
           EI +  M+  ++   DV+I+DTAGR   +E L+ E+ E++ L NP+E++LV D   GQ A
Sbjct: 180 EIARRAMQAARVGGYDVVILDTAGRLHIDEVLMTEVAEVRALVNPHEVLLVTDAMTGQDA 239

Query: 228 KNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPK 287
            N A+ F E V   G I++T++DG ++GG ALS  A    PIK +G GE +D LE F  +
Sbjct: 240 VNVAQEFNEKVGVTG-IVLTRVDGDSRGGAALSMRAVTGVPIKLMGMGEKMDALEAFHAQ 298

Query: 288 KFISRILGLGDLDSLLEK-TEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQ 346
           +   RILG+GD+ +L+EK  E I  +  E     +++GKF L ++ AQ+  I KMG MK 
Sbjct: 299 RIAGRILGMGDVVALVEKAAETIEMDQAERVAKRMMEGKFDLEDMLAQIRQIKKMGDMKG 358

Query: 347 ILSMIPGMGGNMPKEAAQ--LTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAG 404
           +L M+PG+   M ++ A+  + +  +KR + ++ SMT++E+ NP+L+K SR +RIA G+G
Sbjct: 359 LLGMMPGI-SKMQRQMAESKIDDNMMKRQEAIILSMTIKERRNPDLVKASRKKRIADGSG 417

Query: 405 VKQEEIKDLLKYYSTTKNAFGNLKRGKMPKMGGQMG 440
               E+  LLK +         +   KM KMGG+ G
Sbjct: 418 SNVPEVNKLLKQHQQMA-----VVMKKMKKMGGKKG 448



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 335 LETISKMGPMKQILSMIPGMGGNMPKEAAQLT 366
           ++ + KMG  K ++ ++ GMGG    +A  L+
Sbjct: 437 MKKMKKMGGKKGLMGLLGGMGGGGEGDAPDLS 468