Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 315 a.a., signal recognition particle-docking protein FtsY from Rhodopseudomonas palustris CGA009

 Score =  142 bits (357), Expect = 2e-38
 Identities = 90/284 (31%), Positives = 156/284 (54%), Gaps = 15/284 (5%)

Query: 21  FVDK-KLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVY 79
           FV K KL + ++++I+  L+++D+  ++   ++K +     D+     +     + +IV 
Sbjct: 34  FVSKRKLDRAMLEEIEDVLLRADLGTEVAARIAKAVGEGRYDK-----MISASDVKEIVA 88

Query: 80  DELVKLLGETTQKLELDPSKKS-VILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADV 138
            E+ K+L    Q LE+D   K  VIL++G+ GSGKTT+  KL+     +G +  L A D 
Sbjct: 89  AEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGSGKTTTIGKLSARFASEGHKVMLAAGDT 148

Query: 139 YRPAAYQQLKQLSEKINVPLF-GDETRTKTPVEITKEGMEKLKKVDVIIIDTAGRHKEEE 197
           +R AA  QLK   ++   P+  G +      +        K +  DV++IDTAGR +   
Sbjct: 149 FRAAAIDQLKVWGDRTGTPVVAGAQGSDAAGLAFNALTAAKEQGRDVLLIDTAGRLQNRT 208

Query: 198 GLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251
            L++E++++       D T P+ ++LV+D T+GQ A +Q +AF ++    G +++TKLDG
Sbjct: 209 ELMSELEKVVRVIKKVDATAPHAVLLVLDATVGQNALSQVEAFTKTAGVTG-LVMTKLDG 267

Query: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILG 295
           +A+GG  ++   +   P+ FIG GEGV++L  F  + F   I G
Sbjct: 268 TARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAKAIAG 311