Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 507 a.a., signal recognition particle protein Ffh from Phaeobacter inhibens DSM 17395

 Score =  258 bits (659), Expect = 3e-73
 Identities = 159/457 (34%), Positives = 275/457 (60%), Gaps = 23/457 (5%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L + LS   ++L     + ++ VK  +++++ AL+++DV++ +  +  K ++ +A 
Sbjct: 1   MFENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKRVQEQAT 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLL--GETTQKLELDPSKKSVILLIGIQGSGKTTSAA 118
            +A  K ++  + +VKIV+D LV +L   E   +L++D +  + IL++G+QGSGKTT+  
Sbjct: 61  GQAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKVD-NPPAPILMVGLQGSGKTTTTG 119

Query: 119 KLARYIQ-KKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME 177
           KLA+ ++ K+G R  + + DVYRPAA  QL  L  +I V         K PV+I K   +
Sbjct: 120 KLAKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGTQIGVDTLPIVPGQK-PVDIAKRAKQ 178

Query: 178 K--LKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFK 235
           +  L   DV ++DTAGR + +E L+ E+++++D+ +P E +LV+DG  GQ A   A+ F 
Sbjct: 179 QAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVVSPRETLLVVDGLTGQVAVEVAEEFD 238

Query: 236 ESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILG 295
             +  I  +++T++DG  +GG ALS  A    PI+F+G GE +D +E F+P +   RILG
Sbjct: 239 AKIG-ISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRILG 297

Query: 296 LGDLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGM 354
           +GD+ +L+EK ++ ++ E  E  +  ++KG F + +L  QLE + +MG M+ ++ M+PGM
Sbjct: 298 MGDIVALVEKAQETIEAEQAERMMKRMMKGHFNMNDLKMQLEQMIQMGGMQGMMQMMPGM 357

Query: 355 GGNMPKEAAQLTEA----KLKRYKI-MMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEE 409
                K A Q+ E+    K+ R +I M+ SMT +E+ NP L++ SR +RIA G+G++  +
Sbjct: 358 A----KMAKQVEESGFDDKVLRQQIAMIQSMTKKERANPALLQASRKKRIAAGSGMQVSD 413

Query: 410 IKDLLKYY---STTKNAFGNLKRGKMPK--MGGQMGQ 441
           +  L+K +   +      G + +GKM K  M G  G+
Sbjct: 414 LNKLMKMHRQMADVMKKMGKMGKGKMLKQAMSGMFGK 450