Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 561 a.a., signal recognition particle-docking protein FtsY (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (365), Expect = 4e-39
 Identities = 90/287 (31%), Positives = 163/287 (56%), Gaps = 15/287 (5%)

Query: 21  FVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYD 80
           F  KK+  E+ +++++ L+ +DV V+    +   +     ++A  K L   E + +++ +
Sbjct: 278 FKGKKIDDELFEELEEQLLIADVGVETTSRLIASLT----EQASRKQLKDGEALYELMRE 333

Query: 81  ELVKLLGETTQKLELDPSKKS-VILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVY 139
           E+ K L   +  L  + S+   VIL++G+ G GKTT+  KLA+  Q++G    L A D +
Sbjct: 334 EMQKTLEPVSIPLVPENSEGPFVILMVGVNGVGKTTTIGKLAKQYQQQGKSVMLAAGDTF 393

Query: 140 RPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME--KLKKVDVIIIDTAGRHKEEE 197
           R AA +QL+   ++ ++P+    T   +   +  + ++  + +K+D++I DTAGR + + 
Sbjct: 394 RAAAVEQLQVWGQRNDIPVIAQHTGADS-ASVLFDALQAARARKIDILIADTAGRLQNKA 452

Query: 198 GLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251
            L+ E+K++      +D + P+E++L +D + GQ A +QA+ FKE+V   G I ++KLDG
Sbjct: 453 HLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQAQLFKEAVGVTG-ITMSKLDG 511

Query: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGD 298
           +AKGG   +   +   PI+ IG GE +D+L  FD K FI  +    D
Sbjct: 512 TAKGGVIFAIADKFGIPIRHIGVGEQIDDLRPFDAKDFIDALFSHED 558