Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 457 a.a., signal recognition particle protein (RefSeq) from Shewanella loihica PV-4

 Score =  272 bits (696), Expect = 1e-77
 Identities = 159/442 (35%), Positives = 261/442 (59%), Gaps = 9/442 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + +  +KE +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MFENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRAFVNSVKDRAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +   K LS  +  +KIV  EL   +GE  + L L     +VI++ G+QG+GKTTS AKL
Sbjct: 61  GQEVTKSLSPGQAFIKIVQSELENAMGEANEALNLSAQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGM--E 177
           +++++++  +  L ++ADVYRPAA +QL+ L+ ++ V  F  +   K P++I    M   
Sbjct: 121 SKFLRERQKKSVLVVSADVYRPAAIKQLETLANEVEVEFFPSDVSQK-PIDIVDAAMAHA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK +DV+I+DTAGR   +E ++ E+K +     P E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFIDVVIVDTAGRLHVDESMMDEIKALHAAVKPVETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKF+G GE  D LE F P +  SRILG+G
Sbjct: 240 LPLTG-VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E+ E  +D+     + S +K  G F L +   QL+ +  MG M  +L  +PG+G
Sbjct: 299 DVLSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMLEKLPGVG 358

Query: 356 GNMPKEAAQLTEAKLK-RYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLL 414
              P+  AQ+ + KL  + + +++SMT  E++ PE+IK SR +RIA G+G + +++  LL
Sbjct: 359 QLPPEALAQVQDGKLTGQMEAIINSMTPGERKRPEIIKGSRKRRIAMGSGTQIQDVNRLL 418

Query: 415 KYYSTTKNAFGNLK-RGKMPKM 435
           K ++  +     +  +G M KM
Sbjct: 419 KQFTQMQKMMKKMSGKGGMKKM 440