Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 453 a.a., signal recognition particle protein from Pantoea sp. MT58

 Score =  275 bits (702), Expect = 3e-78
 Identities = 156/440 (35%), Positives = 259/440 (58%), Gaps = 7/440 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   LS  L  +     + ++ +KE +++++ AL+++DV + +V +    ++  A+
Sbjct: 1   MFDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K L+  +  +KIV +ELV  +G     L+L     +V+L+ G+QG+GKTTS AKL
Sbjct: 61  GHDVNKSLTPGQEFIKIVRNELVAAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
            +++++K  +  L ++ADVYRPAA +QL+ L++++ V  F     ++ PV+I    +   
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVD-FCPSDLSQKPVDIVNNALREA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           +LK  DV+++DTAGR   +E ++ E+K++     P E + V+D   GQ A N AKAF E+
Sbjct: 180 RLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKF+G GE  + LE F P++  SRILG+G
Sbjct: 240 LPLTG-VILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPERIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E  E  +D    E +   LK    F L +   QL+ +  MG M  ++  +PGMG
Sbjct: 299 DVLSLIEDIESKVDRDQAEKLAKKLKTGDGFDLNDFLEQLKQMRNMGGMASLMGKLPGMG 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                  +Q+ +  L R + +++SMT +E+E PE+IK SR +RIA G+G++ +++  LLK
Sbjct: 359 QLPDNVKSQMDDKVLVRMEAIINSMTRKEREKPEIIKGSRKRRIATGSGMQVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKM 435
            +   +     +K+G M KM
Sbjct: 419 QFDDMQRMMKKMKKGGMAKM 438