Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  278 bits (712), Expect = 2e-79
 Identities = 161/442 (36%), Positives = 264/442 (59%), Gaps = 9/442 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   LS  L  +     + ++ VKE +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +   K LS  +  +KIV  EL K +GE  Q L+L     +V+++ G+QG+GKTTS AKL
Sbjct: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGM--E 177
            + ++ +  +  L ++ADVYRPAA +QL+ L+ +++V  F  +   K P++I K  +   
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQK-PIDIAKAAIAHA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK +DV+I+DTAGR   +E ++ E+K +     P E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKF+G GE  D LE F P +  SRILG+G
Sbjct: 240 LPLTG-VILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E+ E  +D+     + S +K  G F L +   QL+ +  MG M  ++  +PG+G
Sbjct: 299 DVLSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVG 358

Query: 356 GNMPKEAAQLTEAKLKR-YKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLL 414
              P   AQ+ + K+ R  + +++SMT +E++NP+LIK SR +RIA G+G + +++  LL
Sbjct: 359 QLPPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLL 418

Query: 415 KYYSTTKNAFGNLK-RGKMPKM 435
           K ++  +     +  +G M KM
Sbjct: 419 KQFTQMQKMMKKMSAKGGMQKM 440