Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 488 a.a., signal recognition particle-docking protein FtsY (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  124 bits (312), Expect = 5e-33
 Identities = 79/273 (28%), Positives = 147/273 (53%), Gaps = 16/273 (5%)

Query: 32  KDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQ 91
           +++++ LI +DV     F  + ++  +  + A   G        +++ +EL  +     +
Sbjct: 218 EELEEILIMADVG----FEPTTQLIGRLRERARKAGTDDPARFRELLREELEVIFRAPRR 273

Query: 92  KLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPAAYQQLKQLS 151
              ++P +  V+LLIG+ G GKTT+ AKLA   Q +G +  + A D +R AA +QL+  +
Sbjct: 274 IAAVNPPE--VVLLIGVNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWA 331

Query: 152 EKINVPLFGDETRTKTPVEITKEGMEKL--KKVDVIIIDTAGRHKEEEGLLAEMKEMKDL 209
           +++    +  +T    P  +  E M+K   +  D++++DTAGR   +  L+ E+ +++ +
Sbjct: 332 KRVGAGFYA-KTAGADPAAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKV 390

Query: 210 TN------PNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVA 263
                   P+  ILVID T GQ A +Q K F E+   +  I++TKLDG+AKGG  ++   
Sbjct: 391 LGRKHPGAPHRSILVIDATTGQNALSQTKLFNEACG-VDEIVLTKLDGTAKGGIVVAVAM 449

Query: 264 EINAPIKFIGTGEGVDNLEQFDPKKFISRILGL 296
           +   PI ++G GE ++++  F+   F   +LG+
Sbjct: 450 QFGIPITYVGLGEKMEDMRPFNGSDFAMALLGV 482