Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 508 a.a., signal recognition particle protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  283 bits (723), Expect = 1e-80
 Identities = 155/450 (34%), Positives = 264/450 (58%), Gaps = 12/450 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   L+ A  K    + +D+  ++E +++++ AL+++DVN K+V +    ++ + +
Sbjct: 1   MFDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCL 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +   K L+  + +VK+V+DELV+LLG  T +L+L  ++  VI+++G+QGSGKTTS+AK+
Sbjct: 61  GQDVLKSLTPAQQVVKVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSSAKI 120

Query: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGM--EK 178
           A  ++K+ +RP L+  DVYRPAA  QL  L+ ++++P +   T    P++I +  +   K
Sbjct: 121 ANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYY-QSTPDMKPLDIVRAALADAK 179

Query: 179 LKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESV 238
            K+   +++DTAGR   +E L+ E+  +K    P EI+ V D   GQ A   A AF E +
Sbjct: 180 EKQCTAVLLDTAGRLHVDEALMDELAALKATFAPQEILFVADAMTGQDAVTVADAFNEKL 239

Query: 239 SEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGD 298
             I  +++TK+DG A+GG ALS  +   A +K++G GE + ++E F P +   RILG+GD
Sbjct: 240 G-ITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAGRILGMGD 298

Query: 299 LDSLLEKTEDIMDESTEESI-DSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGN 357
           + +L+EK +  ++    E++     +  F L +   Q+  + K+G ++ IL MIPGMG  
Sbjct: 299 MLTLIEKAQSTIEADEAEALTKKFQRASFDLEDFRTQMRRMKKLGSLEGILKMIPGMGAL 358

Query: 358 MPK-EAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLKY 416
             K     + E  + R + ++ SMTM+E+ NP++I  SR  RIAKG+G   +E+  LL+ 
Sbjct: 359 RDKLGQMSVPEKDMARIEAIISSMTMKERRNPDVINGSRRARIAKGSGTTVQEVNQLLRN 418

Query: 417 YSTTKNA------FGNLKRGKMPKMGGQMG 440
           +   +         G    G+MP++ G  G
Sbjct: 419 FEQMREMMKRVMNMGKPGGGRMPRIPGMGG 448