Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 440 a.a., putative signal recognition protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  306 bits (784), Expect = 9e-88
 Identities = 173/443 (39%), Positives = 273/443 (61%), Gaps = 9/443 (2%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L + L  +   LK    + +  V E +KD++KAL+ +DVN K+    +  ++ KAI
Sbjct: 1   MFDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAI 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +     +   + +VKIV+DEL +L+G  T ++ L+ S+ +VIL+ G+QGSGKTT + KL
Sbjct: 61  GQNVLTAVKPSQLMVKIVHDELTQLMGGETVEINLE-SRPAVILMSGLQGSGKTTFSGKL 119

Query: 121 ARYIQ-KKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
           AR ++ KK  +P L+A DVYRPAA +QL+ L+E+I VP++  E  +K PVEI +  ++  
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYS-ELDSKNPVEIAQHAIQEA 178

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           K K  D++I+DTAGR   +E ++ E+  +K+  NP+EI+ V+D   GQ A N AK F E 
Sbjct: 179 KAKGYDLVIVDTAGRLAVDEQMMNEITAIKEAINPDEILFVVDSMTGQDAVNTAKEFNER 238

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           + +   +++TKLDG  +GG ALS  + +N PIKF+GTGE +D ++QF P +   RILG+G
Sbjct: 239 L-DFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRILGMG 297

Query: 298 DLDSLLEKTEDIMDESTEESID-SILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGG 356
           D+ SL+E+ ++  DE   + +   I K +F   +  +Q+  I KMG +K++ SMIPG+G 
Sbjct: 298 DIVSLVERAQEQYDEEEAKRLQKKIAKNQFDFNDFLSQIAQIKKMGNLKELASMIPGVGK 357

Query: 357 NMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLKY 416
            +  +   + +   K  + ++ SMT  E+ NPE++  SR  RIAKG+G   +E+  LLK 
Sbjct: 358 AI--KDIDIDDNAFKSIEAIIYSMTPAERSNPEILNGSRRTRIAKGSGTTIQEVNRLLKQ 415

Query: 417 YSTTKNAFGNLKRGKMPKMGGQM 439
           +  T+     +   KM KM  +M
Sbjct: 416 FDQTRKMMKMVTSSKMGKMMPKM 438