Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 562 a.a., signal recognition particle-docking protein FtsY (RefSeq) from Shewanella sp. ANA-3

 Score =  146 bits (368), Expect = 2e-39
 Identities = 90/292 (30%), Positives = 163/292 (55%), Gaps = 19/292 (6%)

Query: 21  FVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYD 80
           F  KK+  ++ +++++ L+ +DV V+    + K +     + A  K L   E + +++ D
Sbjct: 279 FRGKKIDDDLFEELEEQLLIADVGVETTSRLIKSLT----EHASRKQLKDAEALYELLRD 334

Query: 81  ELVKLLGETTQKLELDPSKKS---VILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAAD 137
           E+ K L      + L P   +   VIL++G+ G GKTT+  KLA+  Q++G    L A D
Sbjct: 335 EMQKTLDPVA--IPLVPENANGPYVILMVGVNGVGKTTTIGKLAKQYQRQGKTVMLAAGD 392

Query: 138 VYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME--KLKKVDVIIIDTAGRHKE 195
            +R AA +QL+   ++ N+P+    T   +   +  + ++  K +K+D++I DTAGR + 
Sbjct: 393 TFRAAAVEQLQVWGQRNNIPVVAQHTGADS-ASVLFDALQAAKARKIDILIADTAGRLQN 451

Query: 196 EEGLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKL 249
           +  L+ E+K++       D   P+E++L +D + GQ A +QA+ F+E+V   G + ++KL
Sbjct: 452 KSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQEAVGVTG-MTISKL 510

Query: 250 DGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDS 301
           DG+AKGG   +   +   P+++IG GE +D+L  F+ K+FI  +      DS
Sbjct: 511 DGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFIDALFTQEKADS 562