Pairwise Alignments

Query, 240 a.a., 50S ribosomal protein L2 from Methanococcus maripaludis S2

Subject, 275 a.a., 50S ribosomal protein L2 (RefSeq) from Shewanella loihica PV-4

 Score =  133 bits (335), Expect = 3e-36
 Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 13/233 (5%)

Query: 9   NRGRGTPKYRSPTHKRKGAVKYRSYD-EMEKDGKILGTVIDILHDPGRSAPVAKVKFAND 67
           N GR T ++    HK+     YR  D +  KDG I   V  + +DP R+A +A V +A+ 
Sbjct: 45  NTGRITVRHVGGGHKQH----YRIVDFKRNKDG-IPAKVERLEYDPNRTANIALVLYADG 99

Query: 68  EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGG 127
           E R +L  +G+Q G++I+ GI AEIK GN LPL  IP G  V+ +E  PG G ++ RS G
Sbjct: 100 ERRYILAAKGMQAGDQIQSGIDAEIKAGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAG 159

Query: 128 CYAHVISHDVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAG-KKYHSLSAK 186
            Y  V++ D     +RL SG  + +   CRAT+G V       +   KAG K++  +   
Sbjct: 160 TYVQVVARDGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGAKRWRGVR-- 217

Query: 187 AVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHIASRRTGK 239
               P VRGVAMN VDHP+GGG  +  G    V+    P +     +++RT K
Sbjct: 218 ----PTVRGVAMNPVDHPHGGGEGRTSGGRHPVTPWGVPTKGYKTRSNKRTDK 266