Pairwise Alignments

Query, 240 a.a., 50S ribosomal protein L2 from Methanococcus maripaludis S2

Subject, 274 a.a., ribosomal protein L2 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  132 bits (332), Expect = 7e-36
 Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 13/233 (5%)

Query: 9   NRGRGTPKYRSPTHKRKGAVKYRSYD-EMEKDGKILGTVIDILHDPGRSAPVAKVKFAND 67
           N GR T ++    HK+     YR  D + +KDG I   +  + +DP R+A +A V +A+ 
Sbjct: 45  NTGRITVRHVGGGHKQH----YRLIDFKRDKDG-IPAKIERLEYDPNRTAHIALVLYADG 99

Query: 68  EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGG 127
           E R +L  +G+Q G++I+ G+ AEIK GN +PL  IP G  V+ +E  PG G ++ RS G
Sbjct: 100 ERRYILAAKGMQAGDKIQSGVEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAG 159

Query: 128 CYAHVISHDVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAG-KKYHSLSAK 186
            Y  V++ D     +RL SG  + +   CRAT G V       +   KAG K++  +   
Sbjct: 160 AYVQVVARDGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIR-- 217

Query: 187 AVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHIASRRTGK 239
               P VRGVAMN VDHP+GGG  +  G    V+    P +     +++RT K
Sbjct: 218 ----PTVRGVAMNPVDHPHGGGEGRTSGGRHPVTPWGVPTKGYKTRSNKRTDK 266