Pairwise Alignments

Query, 229 a.a., ribonuclease III from Methanococcus maripaludis S2

Subject, 253 a.a., ribonuclease III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  123 bits (308), Expect = 4e-33
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%)

Query: 1   MKNFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISEY 60
           +K  ++L   +  +F D+ +   A  HSS+ NEQ    +E NERLE+LGDAVL+L +SE 
Sbjct: 26  VKPVDELQKTIGHRFGDMELLLTAMTHSSWANEQA-VPVEHNERLEFLGDAVLELCVSEE 84

Query: 61  LFKK-ENLSEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVSDV 119
           LF++  +  EG+++++R++ V + +L   A++L+ +  + LGKGE +  G  + +++SD 
Sbjct: 85  LFRRFPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDA 144

Query: 120 FEAFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFI-DYKTKLQEFPE-LINKSINYV 177
            EA + A++LD G  + K  V   + P   E+   +   DYK++LQE  + L      Y 
Sbjct: 145 LEAMLGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVYT 204

Query: 178 NLEETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNALLKLEK 226
            L  +G  HDK+F + V      + +  G S K AE  AA  A+  L+K
Sbjct: 205 LLGSSGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARAVATLDK 253