Pairwise Alignments

Query, 281 a.a., protein translocase subunit SecF from Methanococcus maripaludis S2

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 74.7 bits (182), Expect = 7e-18
 Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 16/256 (6%)

Query: 13  IILALLSLTLVSVNGLKESIDVSGGTEISILAPANTDLSVLK---EQLPDSEVKISESSI 69
           ++L++ S+ L    GL   +D +GGT + + +    D   L+   + LP   V++     
Sbjct: 551 VVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPIGPVQLQAFGS 610

Query: 70  GTFVVIKSGLETDVDSVRA-VVKEFFNVEDLSELSYTEKQI------GSVLSSKFWEEGM 122
              V+I+   +   D+ +A VVK+   V+ + E  Y   +I      G+ +S++ +++GM
Sbjct: 611 PNDVLIRLERQEGGDAAQAEVVKQ---VQGMLERDYAGSEIRRVDSVGASVSAELFQDGM 667

Query: 123 KAVGFAFIFMAIVVYAIFRTPVPSGAVILAAASDMAIAVGGMSLFNIPISTATIAALLML 182
            A+G A I M I ++  F      GAV+     D+   VG  ++  +  +   IAA+L +
Sbjct: 668 MALGLAAIAMLIYIWFRFEWQFGVGAVV-TMLLDVTKTVGFFAITGMQFNLTAIAAILTI 726

Query: 183 VGYSVDTDIMLTTRVLK--RRSGTLDERIAGAMKTGITMSLTTIFAMAVLYLVVTFVVPA 240
           +GYS++  +++  RV +  R   T+  R         T+  T   ++A    ++   V  
Sbjct: 727 MGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAIIPLAVFG 786

Query: 241 ADVLANIAAVLLIGLI 256
            + L   A VLL G++
Sbjct: 787 GEALREFALVLLFGVV 802



 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 106 EKQIGSVLSSKFWEEGMKAVGFAFIFMAI---VVYAIFRTPVPSGAVILAAASDMAIAVG 162
           E+ +G  L +     GM A+   F+ +     + Y +F          +A   ++AI +G
Sbjct: 348 ERTVGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGLF-----GWFANVALVFNLAITLG 402

Query: 163 GMSLFNIPISTATIAALLMLVGYSVDTDIMLTTRVLKRRSGTLDERIAGAMKTGITMSLT 222
            +SL    ++   IA LL+ +G +VD +I++  R+  R        +A +M+TG   +  
Sbjct: 403 ALSLMQATLTLPGIAGLLLSLGMAVDANILINERI--REEAKKGRGVAASMETGFKRAFA 460

Query: 223 TIFAMAVLYLVVTFVVPAADV--LANIAAVLLIGLI 256
           TIF   +  L+   ++ +  V  +   A  + +G+I
Sbjct: 461 TIFDSNITTLIKMAILFSIGVGTIRGFAVTISLGII 496