Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 75/398 (18%)

Query: 33  DLSGGSTIVL-QTESELSESEMTTVNEILTS---RLNTNGLSDVRIYPRGSDEIVIEIPE 88
           DL+G + + L  T ++L+E    ++ + LT+   R+N  G+++  +  +G++ IV+E+P 
Sbjct: 208 DLNGQAVLRLAMTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPG 267

Query: 89  SADLERIQKIL--------------------------TQQGVFTAVIDNQTAYTGQDVSY 122
             D    ++IL                           + G   A I+     TG  V+ 
Sbjct: 268 VQDTAEAKRILGKTANLEFRLAAEPGASKATSESFEFREGGRPAAQIERGLIITGDQVTD 327

Query: 123 VE---------EPGMTASGYG-----------VGFKLTLDGAQKFADVAYGKG------- 155
            +         +  +   G+G           VG  + +   ++     Y K        
Sbjct: 328 AQAGFDEQGRPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPTTTYTKQVVNGVEK 387

Query: 156 GYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSL 215
             PV+ + +EK I +      LA           + G N   E  + A +    L++G L
Sbjct: 388 DVPVQTFKEEKKIIS------LATIQSPLGSQFRITGLNGQGESSELALL----LRAGGL 437

Query: 216 PVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEV 275
              ++     ++ P+LG++ I   + A ++  + V+  I   Y+   I+  + +     +
Sbjct: 438 AAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRFFGIIATVALA--VNM 495

Query: 276 LLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKR 329
           +++L   SL+   L L  IAGI+  +G  VD  ++I     +E  +G    + + +   R
Sbjct: 496 VMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTIQRAINEGFGR 555

Query: 330 AFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGV 367
           AF  I  A  TT+     LF MG G +KGFA+T   G+
Sbjct: 556 AFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGI 593