Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 303 a.a., protein-export membrane protein, SecD/SecF family from Pseudomonas stutzeri RCH2

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 17/245 (6%)

Query: 134 GVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGS 193
           G+ F L   G     ++ Y +   PVEL    + +   L+ A  AD  +      T    
Sbjct: 33  GLNFGLDFTGGT-LIELGYER---PVEL----EQVRGQLVQAGFADAVVQSFGATTDVLV 84

Query: 194 NPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAV 253
               +D      + +AL++      V ++ +  V P +G E      +  + A   +   
Sbjct: 85  RMPGDDPQLGERVASALRNADSGNSVSVKRVEFVGPAVGEELRDQGGLGMLLALGGILVY 144

Query: 254 ISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITD 313
           ++FR++  K  L  +++ F +V+L+LG  S      DL  +A ++A +G  ++  IVI D
Sbjct: 145 VAFRFQW-KFGLGAVLSLFHDVILVLGVFSFFQISFDLTVLAAVLAVIGYSLNDTIVIFD 203

Query: 314 ETISG--------EAKKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIA 365
                          + +  S  +        + +T+ A+  L V G   L GF++  + 
Sbjct: 204 RIRENFRMLRKAELLENINISTTQTLLRTVATSVSTLLAVGALMVFGGENLWGFSLALLI 263

Query: 366 GVLMG 370
           GV  G
Sbjct: 264 GVGAG 268



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 10 VILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTE 45
          V+L V  LASL++   KG++FG+D +GG+ I L  E
Sbjct: 19 VLLTVASLASLVV---KGLNFGLDFTGGTLIELGYE 51