Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 300 a.a., protein translocase subunit SecF from Vibrio cholerae E7946 ATCC 55056

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 218 KVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLL 277
           +V I   S V   +G E I    +A +   +++ A +SFR++  ++    L+    +V+L
Sbjct: 110 QVQIVSNSMVGSQVGQELIDQGGLALLICLLSILAYLSFRFEW-RLASGALLALLHDVIL 168

Query: 278 ILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITD---ETISGEAKKVTKSIK-RAFFI 333
           +LGF ++   + +L   A ++A +G  ++  I+I+D   E +  + +  T  I  +A   
Sbjct: 169 VLGFFAITQMEFNLTVFAAVLAVLGYSLNDSIIISDRIRELLLAKQQTPTADINDQAIIA 228

Query: 334 IFG----AAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
            F      + TT+  +  L++MG   L+GFAI    G++ G
Sbjct: 229 TFSRTMVTSGTTLMTISALWLMGGAPLQGFAIAMFIGIISG 269



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 11/44 (25%), Positives = 25/44 (56%)

Query: 10 VILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEM 53
          +I ++ ++ SL   A KG++ G+D +GG          +++S++
Sbjct: 18 IISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQL 61