Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 464 a.a., preprotein translocase subunit SecD from Synechococcus elongatus PCC 7942

 Score =  110 bits (276), Expect = 6e-29
 Identities = 102/429 (23%), Positives = 191/429 (44%), Gaps = 73/429 (17%)

Query: 9   VVILLVCVLASLLLIAFKGISFGVDLSGGS--TIVLQTESEL---SESEMTTVNEILTSR 63
           ++++L  V A++ ++    I  G+DL GGS  TI+++  +E+    + E+  V  ++ +R
Sbjct: 8   LILILALVAAAIFVLVQLPIRLGLDLQGGSQLTILVKPTTEIPSVGDRELEAVQRVIENR 67

Query: 64  LNTNGLSDVRIYPRGSDEIVIEIPESADLER----------------------------- 94
           +N  G+S+  I   GSD+I++++P  ++ E+                             
Sbjct: 68  VNGLGVSEAVIQTAGSDKILVQLPGVSNPEQAERVLGGTAQLEFREQNPGTEAQVTPLQQ 127

Query: 95  -----------------------IQKILTQQGVFTAVIDNQTAYTGQDVS-YVEEPGMTA 130
                                  +++ L +  V  A        TG+ +   + +P  T 
Sbjct: 128 LVSQARGALEIERRNGDPTKVAELEQTLERSQVELAKFFGPAQITGKSLKDALAQPTQTG 187

Query: 131 SGYGVGFKLTLDGAQKFADVAYGKGGY--PVELYMDEKAISAPLLSADLADGNIHQNQVI 188
           + + V  +   +G  +FA +     G    + +++D   ISAP++  + A   I     +
Sbjct: 188 NTWEVALRFDTEGGDQFAALTKNLAGTGRSIGIFLDGVLISAPVVGPEFAQTGITGGSAV 247

Query: 189 TVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFI 248
            + G   TE+  D A      L+ G+LP+ V I    +V  TLG + I+ S+ AGI   +
Sbjct: 248 -ITGRFTTEQAEDLA----IQLRGGALPLPVEIVENRTVGATLGRDSIQRSIYAGIGGLL 302

Query: 249 AVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQ 308
            V   +   Y+ P ++  I +  ++  LL L    L+   L L  IAG + ++G  VD  
Sbjct: 303 LVLIFMVAYYQLPGLIADISLAIYA--LLSLAAFDLLGVTLTLPGIAGFLLSIGMAVDAN 360

Query: 309 IVITDETI----SGEA--KKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAIT 362
           ++I + T     +G++  + V     RAF  I  +  TT+ A   LF +  G++KGFA+T
Sbjct: 361 VLIFERTREELRAGKSLYRSVESGFYRAFSSILDSNVTTLIACGALFWLSSGLVKGFALT 420

Query: 363 TIAGVLMGI 371
              GV++ +
Sbjct: 421 LAIGVMVSM 429