Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 844 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score =  104 bits (260), Expect = 8e-27
 Identities = 101/381 (26%), Positives = 169/381 (44%), Gaps = 53/381 (13%)

Query: 32  VDLSGGSTIVLQTESELSESEMTTVN---EILTSRLNTNGLSDVRIYPRGSDEIVIEIPE 88
           V  +G    +  TE+ L++     V    EI+ +R++  G+++  I   GS+ I++++P 
Sbjct: 136 VTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPLIQRIGSNRILVQLPG 195

Query: 89  SADLERIQKIL--TQQGVF----TAVIDNQTAYTGQDV--------SYVEEPGMTASGYG 134
             D  R++++L  T Q  F     +V   Q A  G D+         Y  E  +  SG  
Sbjct: 196 LQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGANDGNRYPVESRVAISGER 255

Query: 135 ----------------VGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLA 178
                           V F     GA++FAD+     G P  + +D K ++AP+++  + 
Sbjct: 256 LDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVLDGKVLTAPVINEPIL 315

Query: 179 DGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKG 238
            G           G       ++EA V+   L+SG+LP  + I    SV P LGS+ I+ 
Sbjct: 316 GGR----------GQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGSDSIRM 365

Query: 239 SVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGII 298
            +  G+  F  V  ++   Y    ++  + +      ++ +G   LI   L L  IAGII
Sbjct: 366 GLFTGLAGFGLVVVLMVVLYGAWGMIANVGLV--LHTIMTIGVLGLIGSTLTLPGIAGII 423

Query: 299 AAVGTGVDHQIVIT------DETISGEAKKVTKSIKRAFFIIFGAAATTIAAMLPLFVMG 352
             +G  VD  I+I        E  +G  K +     +A+  I  +  TT+A  + LF  G
Sbjct: 424 LGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFG 483

Query: 353 IGMLKGFAITTIAGVLMGISI 373
            G +KGFA+T + G+  GIS+
Sbjct: 484 SGPVKGFAVTMMLGI--GISM 502



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 22  LIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTS-----RLNTNGLSDVRIYP 76
           ++ F+ ++ G+DL GGS +VL+ +   +  +   +N +L       R      S  RI  
Sbjct: 38  VLPFEPVTLGLDLRGGSHLVLEVDG--AGLQKARLNSLLDDTRRVLRGERVSASSARI-- 93

Query: 77  RGSDEIVIEIPESADLERI 95
              + + + IP++ D +++
Sbjct: 94  -SGNSVTVSIPDAQDRDKV 111