Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 858 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score = 68.9 bits (167), Expect = 5e-16
 Identities = 86/340 (25%), Positives = 144/340 (42%), Gaps = 36/340 (10%)

Query: 77  RGSDEIVIEIPESADLERIQKILTQQG------VFTAVIDNQTAYT----GQDVSY-VEE 125
           RG D + +++P   + +R++ +L Q+G      + +++   Q   T    G +V Y +++
Sbjct: 188 RGGDRLSVQVPGLDEPQRLKDLLGQRGDVALKWLDSSMPAQQAVDTRPPAGSEVLYSLDD 247

Query: 126 PGMTASGYGVGFKLTLD--GAQKFADVAYGKGGYPVELYMDEKAISAPLLSAD------- 176
           P +        F    D   AQ   D A  +      +     A  AP L +D       
Sbjct: 248 PPIPYLVERRAFAAAPDFVEAQPGFDPATSEPVVNARIAAGAAARVAPFLQSDPRKQFAI 307

Query: 177 LADGNIHQNQVITVAGSNPTEE-----DIDEAWVIYTALKSGSLPVKVHIEYISSVSPTL 231
           + DG +    V+  A S            D A  +   +++G LPV + +    +V P  
Sbjct: 308 VLDGQVISTSVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERTVGPED 367

Query: 232 GSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDL 291
           G++ +   + AG+ A IAVAA +   Y    +V  I +     V+LI+   S+    L L
Sbjct: 368 GADAVANGLTAGLIAAIAVAACMIGFYGFFGVVAVIAV--IVNVVLIIAVLSVTGATLTL 425

Query: 292 ASIAGIIAAVGTGVDHQIVITDETISGEAKKVTKSIKRA--------FFIIFGAAATTIA 343
             IAGII  +G  VD  ++I  E +  EA+   K ++RA           I  A  T   
Sbjct: 426 PGIAGIILTIGIAVDSNVLIY-ERLREEARTSGKPLRRALDDGFERVLRSIVDANLTIFI 484

Query: 344 AMLPLFVMGIGMLKGFAITTIAGVLMGISISRPAFSRIIQ 383
           A   L  +G G ++GFA+T   G +  I  +     R+I+
Sbjct: 485 AGAILLYLGSGAIRGFAVTLAIGSVTTILTAHSLTRRLIR 524



 Score = 55.5 bits (132), Expect = 6e-12
 Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 19/258 (7%)

Query: 128 MTASGYGVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLADGNIHQNQV 187
           MTA        LT  G    AD    +GG  +EL           + A L + N+   QV
Sbjct: 562 MTALSLASLVLLTSLGLNMGADF---RGGSVIELRARTGVADGADIRARLDELNLGDVQV 618

Query: 188 ITVAGSN------PTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVI 241
             +  +       P++E  D A      L    L  +     +  V P +  E  +   +
Sbjct: 619 EELGSARDVLVRIPSQEAGDNAEQTAVGLVRSELEDQYVFRRVEVVGPGVSGELTRAGSL 678

Query: 242 AGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAV 301
           A   A +AV   +  R+   +  +  ++    +VLL LGF  L   + +LASIA ++  V
Sbjct: 679 AVAAAVLAVLLYVWLRFGR-RFAVGAIVATLHDVLLTLGFLVLTGIEFNLASIAALLTIV 737

Query: 302 GTGVDHQIVITDETISGEAK--------KVTKSIKRAFFIIFGAAATTIAAMLPLFVM-G 352
              +   +VI D       +         +  SI +        A TT+ A++ L++  G
Sbjct: 738 CYSLSDTMVIYDRVRENLVRYRRMPLSVLIDTSINQTLSRTVLTAVTTLLALVALYLFGG 797

Query: 353 IGMLKGFAITTIAGVLMG 370
            G+++ F+ T I GVL+G
Sbjct: 798 SGLVQSFSATLIFGVLVG 815



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 10  VILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGL 69
           +++    LASL+L+   G++ G D  GGS I L+  + +++         + +RL+   L
Sbjct: 560 ILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVAD------GADIRARLDELNL 613

Query: 70  SDVRIYPRGS-DEIVIEIPESADLERIQKILTQQGVFTAVIDNQTAYTGQDV 120
            DV++   GS  ++++ IP     +  ++  T  G+  + +++Q  +   +V
Sbjct: 614 GDVQVEELGSARDVLVRIPSQEAGDNAEQ--TAVGLVRSELEDQYVFRRVEV 663