Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  112 bits (281), Expect = 3e-29
 Identities = 93/360 (25%), Positives = 162/360 (45%), Gaps = 65/360 (18%)

Query: 58  EILTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFT----------- 106
           EI+  R++  G+++  I  +G+D I++++P  +D  RI+++L Q    T           
Sbjct: 159 EIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGD 218

Query: 107 ---------------------AVIDNQTAYTGQDVSYVEEPGMTASG-YGVGFKLTLDGA 144
                                 ++  +    G  ++  +      +G + V F     GA
Sbjct: 219 GSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGA 278

Query: 145 QKFADVAYGKGGYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAW 204
           ++FADV     G P  + +D+K +SAP++   +  G    +   T A +N          
Sbjct: 279 RRFADVTKMAVGKPFAIVLDDKVVSAPVIREPITGGRGQISGSFTAASAND--------- 329

Query: 205 VIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRY------ 258
            +   L++G+LP  + +    +V P LG++ I+  +IA    F+ V A +   Y      
Sbjct: 330 -LAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGLFGWF 388

Query: 259 KNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISG 318
            N  +V  + IT        LG  SL+   L L  IAG++ ++G  VD  I+I +E I  
Sbjct: 389 ANVALVFNLAIT--------LGALSLMQATLTLPGIAGLLLSLGMAVDANILI-NERIRE 439

Query: 319 EAKK-------VTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGI 371
           EAKK       +    KRAF  IF +  TT+  M  LF +G+G ++GFA+T   G+++ +
Sbjct: 440 EAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVGTIRGFAVTISLGIIVSM 499



 Score = 52.4 bits (124), Expect = 5e-11
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 221 IEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILG 280
           I  + SV  ++ +E  +  ++A   A IA+   I FR++  +  +  ++T   +V   +G
Sbjct: 648 IRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEW-QFGVGAVVTMLLDVTKTVG 706

Query: 281 FASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEA--------KKVTKSIKRAFF 332
           F ++   + +L +IA I+  +G  ++ ++V+ D               + + KSI     
Sbjct: 707 FFAITGMQFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLG 766

Query: 333 IIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGISIS 374
              G +  T  A++PL V G   L+ FA+  + GV++  S S
Sbjct: 767 RTVGTSLATFLAIIPLAVFGGEALREFALVLLFGVVLATSSS 808



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 27/189 (14%)

Query: 5   KDHKVVILLVCVLASLLLI--AFKG-----------ISFGVDLSGGSTIVLQTESE-LSE 50
           K   + I+ VC++  LL +  AFK            I+ G+DL GGS ++L  +   +  
Sbjct: 6   KAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMPAVIH 65

Query: 51  SEMTTVNEILTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVID 110
             + T+ E + + L  + L    +  R    +V  +  + D+E      T +G    ++ 
Sbjct: 66  DRLETMLESVRTNLRKDSLRYTGLAVRDRS-VVFTLASADDIE------TARGALAPLV- 117

Query: 111 NQTAYTGQDVSYVEEPGMTASGYGVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISA 170
            Q    G+   Y    G+T  G      L   G Q +AD A  +    V   +DE  ++ 
Sbjct: 118 -QPDEPGKPADY----GLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNE 172

Query: 171 PLLSADLAD 179
           P+++   AD
Sbjct: 173 PMIARQGAD 181



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 13  LVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGLSDV 72
           +V  +AS++L    G+++GVD +GG+ + +++++ +    + T        L +  +  V
Sbjct: 551 VVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRT-------DLQSLPIGPV 603

Query: 73  RIYPRGSDE---IVIEIPESADLERIQKILTQQGVFTAVIDNQTAYTGQDVSYVEEPGMT 129
           ++   GS     I +E  E  D  + + +   QG+       +  Y G ++  V+  G +
Sbjct: 604 QLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGML------ERDYAGSEIRRVDSVGAS 657

Query: 130 AS 131
            S
Sbjct: 658 VS 659