Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 351 a.a., SecF protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.9 bits (128), Expect = 7e-12
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%)

Query: 206 IYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVL 265
           + TAL  G+   + ++     V PT+G E     ++    A + +AA +  R+ +    L
Sbjct: 113 VKTALGEGATYRRTNL-----VGPTVGGEATIAGLLTVALALVLIAAYVWLRF-DWHYAL 166

Query: 266 PILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETI--------S 317
            +++    +V+ +LG  +L     DL SIA ++      ++  +VI D           +
Sbjct: 167 GVVLALSHDVVAVLGLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTPDA 226

Query: 318 GEAKKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAIT----TIAGVLMGISI 373
             A  V KSI R        + +T+  M  L ++G   L+GFA+     T+ G L  I +
Sbjct: 227 PLATVVNKSINRTLARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYV 286

Query: 374 SRPA 377
           + PA
Sbjct: 287 AVPA 290



 Score = 30.8 bits (68), Expect = 6e-05
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 11  ILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGLS 70
           +LLVC+LA    +  +G+  G+D +GG  +  +T + +   ++       + R +  G  
Sbjct: 30  LLLVCLLA----LGLRGLDLGIDFTGGLVVEARTATAMDPVDLRQ-----SLRASVVGEV 80

Query: 71  DVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVIDNQT 113
           DV  Y      + + +      ++   +   +GV TA+ +  T
Sbjct: 81  DVTTYGEDGRSVTVRVGRQTGGDQAM-LQALEGVKTALGEGAT 122