Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 553 a.a., protein-export membrane protein SecD from Phaeobacter inhibens DSM 17395

 Score =  108 bits (270), Expect = 4e-28
 Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 51/372 (13%)

Query: 39  TIVLQTESELSESEMTTVN--EILTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQ 96
           T+ L  + +L+  + T     EI+  R++  G  +  I  +GSD I+I++P       ++
Sbjct: 169 TVELSEQEKLASDDRTVRQALEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELK 228

Query: 97  KIL--TQQGVFTAVIDNQT--------------AYTGQDVSYVEEPGMTASGY------- 133
           +I+  T Q  F  V+   T              +     V Y  E     +G        
Sbjct: 229 EIIGTTAQLTFNPVVGRGTDADANAGVGNKVVPSLDEDGVFYTVEAAPVVTGEELVDAQP 288

Query: 134 --------GVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLADGNIHQN 185
                    V F+    GA+KF D      G P  + +DE+ +SAP++ + +  G+    
Sbjct: 289 SFDQNGRPAVSFRFNTTGARKFGDYTAENIGSPFAIVLDEEVVSAPVIQSHIPGGS---- 344

Query: 186 QVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIF 245
            +IT  G+   EE  + A +    L++G+LP  +      ++ P LG + I    +A I 
Sbjct: 345 GIIT--GNFTIEESTNMAIL----LRAGALPAGLEFLEERTIGPELGQDSIDAGKVATIV 398

Query: 246 AFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGV 305
           AF+ V   ++  Y    +   I +     + LI G  SLI   L L  IAGI+  VG  V
Sbjct: 399 AFVGVLVFMALSYGLFGVFANIAL--ILNIALIFGALSLIGATLTLPGIAGIVLTVGMAV 456

Query: 306 DHQIVITDETIS------GEAKKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGF 359
           D  ++I +          G A+ + +   +A   I  A  TT    + LF MG G ++GF
Sbjct: 457 DANVLIFERIREELKAGRGPARAIDEGYSKALSAILDANITTFITAVILFAMGSGPVRGF 516

Query: 360 AITTIAGVLMGI 371
           AIT   G++  +
Sbjct: 517 AITLGLGIMTSV 528