Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 322 a.a., protein-export membrane protein SecF from Phaeobacter inhibens DSM 17395

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 224 ISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFAS 283
           + SV P +  E ++ +V+A   A  AV   I  R++  +  L  +     +V+L +G  S
Sbjct: 132 VESVGPKVSGELVQTAVLAVALAIGAVLIYIWLRFEW-QFALGAVAALVHDVVLTIGVFS 190

Query: 284 LIDWKLDLASIAGIIAAVGTGVDHQIVITD---ETISGEAKK-----VTKSIKRAFFIIF 335
            +  K DLA IA ++  VG  ++  +V+ D   E +    KK     +  SI        
Sbjct: 191 ELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKPLAEVLNISINETLSRTV 250

Query: 336 GAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
             + TT+ A++ L+V+G  +++GF    I GV++G
Sbjct: 251 MTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIIG 285



 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 11 ILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESEL 48
          I  + ++      A +G++FG+D  GG+TI  ++ +E+
Sbjct: 24 ISALMIVVGFASFALQGLNFGIDFRGGTTIRTESTTEI 61